CF417832

Overview
NameCF417832
Unique NameCF417832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7003 contig Csv1_Contig7003:144..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.717e-36
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.928e-36
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.824e-36
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.824e-36
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 3.824e-36
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 8.520e-36
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 8.520e-36
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 2 
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of CF417832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_BOVIN1.717e-3696.15Histone H4 OS=Bos taurus PE=1 SV=2[more]
H4_ASEAQ1.717e-3696.15Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRFO1.717e-3696.15Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H4_ACRAS1.717e-3696.15Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H43_MAIZE2.928e-3697.44Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL3.824e-3694.87Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA3.824e-3696.15Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI3.824e-3694.87Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU8.520e-3694.87Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE8.520e-3694.87Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-762 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417832 ID=CF417832; Name=CF417832; organism=Citrus sinensis; type=EST; length=455bp
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCNTAGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTACGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTGCATTTTGTAAGGTTA
ATGACCTATGATTTTGAGTAGAATTAACGATAGATGGTTGTGGAGCTTCT
TGGTA
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