CF417832

Overview
NameCF417832
Unique NameCF417832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7003 contig Csv1_Contig7003:144..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.360e-33
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVY+LKRQGRT+YGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 2.320e-33
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 2.320e-33
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRIS LIYEETR VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 5.169e-33
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 5.169e-33
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYE+ R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.350e-32
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 2
Query:    5 IQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            I GITKPAIRRLA RGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   28 IMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 104          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.350e-32
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 2
Query:    5 IQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            I GITKPAIRRLA RGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   28 IMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 104          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.715e-32
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            +I+GITKPAIRRLA RGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.715e-32
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            +I+GITKPAIRRLA RGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 5.715e-32
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 2
Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            +I+GITKPAIRRLA RGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
The following BLAST results are available for this feature:
BLAST of CF417832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SCHPO1.360e-3387.18Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE... [more]
H4_CANGA2.320e-3389.74Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD2.320e-3389.74Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST5.169e-3388.46Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO5.169e-3388.46Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H4_STYLE3.350e-3288.31Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO3.350e-3288.31Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H4_TETTH5.715e-3285.90Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY5.715e-3285.90Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY5.715e-3285.90Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-762 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417832 ID=CF417832; Name=CF417832; organism=Citrus sinensis; type=EST; length=455bp
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCNTAGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTACGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTGCATTTTGTAAGGTTA
ATGACCTATGATTTTGAGTAGAATTAACGATAGATGGTTGTGGAGCTTCT
TGGTA
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