CF417835

Overview
NameCF417835
Unique NameCF417835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 74/218 (33.94%), Postives = 112/218 (51.38%), Query Frame = 2
Query:   29 VCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILV-----------------KSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQ---NDSPATLLARVIGNHWSH 622
            V +KII+N   + + +  EI +LK + + D  +K+  + + D+F +  H+ I  ELL  N +EF K N        + +P ++ +  Q   AL+FLH   L H DLKPENIL                  KS     ++V D GS+ F+ +H  + V +R YR PEVIL L + +  D+WS+GCIL E   G  LFQ   N     ++ +++G   SH
Sbjct:  183 VALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQP----YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSH 396          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 74/218 (33.94%), Postives = 112/218 (51.38%), Query Frame = 2
Query:   29 VCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILV-----------------KSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQ---NDSPATLLARVIGNHWSH 622
            V +KII+N   + + +  EI +LK + + D  +K+  + + D+F +  H+ I  ELL  N +EF K N        + +P ++ +  Q   AL+FLH   L H DLKPENIL                  KS     ++V D GS+ F+ +H  + V +R YR PEVIL L + +  D+WS+GCIL E   G  LFQ   N     ++ +++G   SH
Sbjct:  331 VALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQP----YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSH 544          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 74/218 (33.94%), Postives = 112/218 (51.38%), Query Frame = 2
Query:   29 VCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILV-----------------KSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQ---NDSPATLLARVIGNHWSH 622
            V +KII+N   + + +  EI +LK + + D  +K+  + + D+F +  H+ I  ELL  N +EF K N        + +P ++ +  Q   AL+FLH   L H DLKPENIL                  KS     ++V D GS+ F+ +H  + V +R YR PEVIL L + +  D+WS+GCIL E   G  LFQ   N     ++ +++G   SH
Sbjct:  331 VALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQP----YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSH 544          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 74/218 (33.94%), Postives = 112/218 (51.38%), Query Frame = 2
Query:   29 VCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILV-----------------KSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQ---NDSPATLLARVIGNHWSH 622
            V +KII+N   + + +  EI +LK + + D  +K+  + + D+F +  H+ I  ELL  N +EF K N        + +P ++ +  Q   AL+FLH   L H DLKPENIL                  KS     ++V D GS+ F+ +H  + V +R YR PEVIL L + +  D+WS+GCIL E   G  LFQ   N     ++ +++G   SH
Sbjct:  183 VALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQP----YPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSH 396          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: PRP4B_DICDI (Serine/threonine-protein kinase prpf4B OS=Dictyostelium discoideum GN=prpf4B PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 66/191 (34.55%), Postives = 107/191 (56.02%), Query Frame = 2
Query:    2 AHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKH--DPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSC-FETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLF 565
            A +  T  DV +KII+N        L EI++L+ ++        K H +++ D+F YR HL IV E +  +L   H+  ++ G ++  ++  ++    Q   AL+ +    ++H D+KP+NI+V   ++  +K++D GS+       +  Y+ SR YRAPE+ILG  YD  ID+WS+GC LAE  TG  LF
Sbjct:  507 AKETKTNEDVVIKIIRNRPSMHRSGLKEIEILQKISNTPTSSNQKSHCIQMKDHFNYRNHLCIVFEPMSMSL---HQLIKKYGKDIGLSLNAVRVYAKQLFLALKHIKNSKILHADIKPDNIVVNE-AKNTIKIVDFGSAGEIHESEITPYLVSRFYRAPEIILGHKYDYSIDVWSVGCCLAEFFTGKFLF 693          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.718e-26
Identity = 79/233 (33.91%), Postives = 119/233 (51.07%), Query Frame = 2
Query:    8 DLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKH-DPGDKY--HLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMP--RLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSR--------------------------------CEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLA 595
            D ++   V +KI+++ K + + +L EI +L+ + K  +   KY  H +RL D F +++H+ +V +    +LYEF K NR      Y  +P  ++Q+I+ Q L A+  +H L L+H DLKPENIL++S SR                                 ++ VID G + FE  H  + V SR YR PE+ILG+ +    DIW +GCIL EL  G  LF   +    LA
Sbjct:  609 DTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFKDHICLVFKRYGLSLYEFLKKNR------YRPLPLSQIQNISKQLLTAIYSMHKLSLVHTDLKPENILLES-SRFTYFDNSIPLQFKNSIDTTSNNSVDHYCHLVDTDIVVIDFGGATFENTHHTAIVCSRPYRPPEIILGMGWSYPCDIWGVGCILVELYLGYTLFDTHNNVQHLA 834          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: PRP4_SCHPO (Serine/threonine-protein kinase prp4 OS=Schizosaccharomyces pombe GN=prp4 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 67/189 (35.45%), Postives = 105/189 (55.56%), Query Frame = 2
Query:    2 AHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDH-LCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLF 565
            A D +      +KII+NN+  + + L E+ +L+ +   D   K H++    +F ++ HL +V E+L  NL +  K   + G  V  ++  ++    Q   AL  L    +IH D+KP+N+LV    R  +K+ DLGS+   +++ +  Y+ SR YRAPE+ILG  Y   ID WS+GC L EL TG +LF
Sbjct:  176 ALDRNRNQTFAIKIIRNNEVMYKEGLKEVSILERLQAADREGKQHIIHYERHFMHKNHLCMVFEMLSLNLRDILK---KFGRNVGLSIKAVRLYAYQMFMALDLLKQCNVIHSDIKPDNMLVNE-KRNILKICDLGSASDASENEITPYLVSRFYRAPEIILGFPYSCPIDTWSVGCSLYELYTGQILF 360          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: KNS1_YEAST (Dual specificity protein kinase KNS1 OS=Saccharomyces cerevisiae GN=KNS1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 68/226 (30.09%), Postives = 113/226 (50.00%), Query Frame = 2
Query:   29 VCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILV------------------------------KSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLF---QNDSPATLLARVIG 607
            V VK+I+    + + +  E+++L+ +  +DP  ++  L L + F Y+ H+ +V +L   ++Y+F   N    G   F    +Q+I  Q + ++ FLH LG+IH DLKPENIL+                              K     E+K+ID GS+ F  ++    + +R YRAPE++LGL +    DIWS+ C+L EL  G  L+   +N     ++ R+ G
Sbjct:  340 VAVKVIRAVDRYREAAKTELRILQTILNNDPQGQFQCLLLRECFDYKNHICLVTDLYGRSIYDFMCSN----GIARFPGSHIQAIARQLIRSVCFLHDLGIIHTDLKPENILICDETHIAQKLPLKTVQSLSKRRREASKGKRKILKNPEIKIIDFGSAIFHYEYHPPVISTRHYRAPEIVLGLGWSFPCDIWSIACVLVELVIGESLYPIHENLEHMAMMQRING 561          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: JNK1_CAEEL (Stress-activated protein kinase jnk-1 OS=Caenorhabditis elegans GN=jnk-1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  176 LLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLG--SSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVI 604
            L IV EL+ ANL +  + + +          RL  +  Q L  ++ LH  G+IH DLKP NI+V+S   C +K++D G   +  E   +  YV +R YRAPEVILG+ Y + +D+WS+GCI  EL  G VLF          R+I
Sbjct:  197 LYIVMELMDANLCQVIQMDLDH--------ERLSYLLYQMLCGIRHLHSAGIIHRDLKPSNIVVRS--DCTLKILDFGLARTAIEAFMMTPYVVTRYYRAPEVILGMGYKENVDVWSIGCIFGELIRGRVLFPGGDHIDQWTRII 331          
BLAST of CF417835 vs. ExPASy Swiss-Prot
Match: JNK1_ANCCA (Stress-activated protein kinase JNK-1 OS=Ancylostoma caninum GN=JNK-1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 58/145 (40.00%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  176 LLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLG--SSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVI 604
            L IV EL+ ANL +  + + +          RL  +  Q L  ++ LH  G+IH DLKP NI+VKS   C +K++D G   +  E   +  YV +R YRAPEVILG+ Y + +D+WS+GCI  EL  G VLF          R+I
Sbjct:  104 LYIVMELMDANLCQVIQMDLDH--------ERLSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS--DCTLKILDFGLARTAVEAFMMTPYVVTRYYRAPEVILGMGYGENVDVWSVGCIFGELIRGRVLFPGADHIDQWTRII 238          
The following BLAST results are available for this feature:
BLAST of CF417835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLK3_RAT1.965e-2633.94Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE1.965e-2633.94Dual specificity protein kinase CLK3 OS=Mus muscul... [more]
CLK3_HUMAN1.965e-2633.94Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN1.965e-2633.94Dual specificity protein kinase CLK3 OS=Bos taurus... [more]
PRP4B_DICDI3.352e-2634.55Serine/threonine-protein kinase prpf4B OS=Dictyost... [more]
CLKA_DICDI5.718e-2633.91Probable serine/threonine-protein kinase clkA OS=D... [more]
PRP4_SCHPO1.664e-2535.45Serine/threonine-protein kinase prp4 OS=Schizosacc... [more]
KNS1_YEAST6.322e-2530.09Dual specificity protein kinase KNS1 OS=Saccharomy... [more]
JNK1_CAEEL3.590e-2039.31Stress-activated protein kinase jnk-1 OS=Caenorhab... [more]
JNK1_ANCCA3.590e-2040.00Stress-activated protein kinase JNK-1 OS=Ancylosto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-765 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417835 ID=CF417835; Name=CF417835; organism=Citrus sinensis; type=EST; length=626bp
AGCACATGACCTTCACACAGGCATGGATGTTTGTGTGAAAATTATTAAGA
ACAACAAAGATTTTTTTGATCAAAGCCTCGATGAGATAAAGCTTCTCAAG
TATGTCAACAAGCATGATCCCGGAGACAAATACCATCTTCTGCGTTTGTA
TGATTATTTCTACTATCGAGAGCATCTGCTAATAGTATGTGAGCTCCTGA
AGGCGAACTTGTATGAGTTCCATAAATTTAATAGAGAATCCGGAGGAGAG
GTCTATTTTACAATGCCGAGGTTGCAGTCTATTACTATCCAGTGTCTTGA
AGCTCTTCAATTCTTGCACGGCCTTGGACTTATTCATTGTGATTTGAAGC
CTGAAAACATCTTAGTGAAAAGTTATAGTAGATGTGAGGTGAAGGTCATT
GATCTTGGGAGTAGCTGTTTTGAGACAGATCATCTCTGCTCCTATGTTCA
ATCCAGGTCCTATCGTGCACCAGAAGTTATCCTTGGACTGTCATACGATA
AGAAGATAGACATATGGTCACTTGGCTGCATTTTGGCAGAACTCTGTACT
GGAAATGTTCTCTTCCAAAATGATTCTCCAGCAACATTACTTGCACGGGT
GATTGGGAATCATTGGTCCCATTGAA
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