CF417837

Overview
NameCF417837
Unique NameCF417837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:71..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPV 155          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPV 153          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_HUMAN (Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPV 153          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHMP5_XENLA (Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  236 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 517
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALS 150          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPV 151          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPV 151          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_DEBHA (Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii GN=SNF7 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  248 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            NK  A   LKRK+ YE  + ++ N    +  Q+  +EGA    ET+ A++ GA  MK +    ++D V+ TMD+I EQ E   +I EA+S P+
Sbjct:   56 NKALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPV 148          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4A_HUMAN (Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  224 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            AK Y   KNKRAA+Q L+RK+ +EQQ+ Q       +  Q   +E A    E +  +   A +MK   +  +ID VD+ M +I EQ E  +QI +A+S P+
Sbjct:   51 AKKYG-TKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPM 150          
The following BLAST results are available for this feature:
BLAST of CF417837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CHM4B_CHICK1.860e-1141.49Charged multivesicular body protein 4b OS=Gallus g... [more]
CHM4B_MOUSE2.429e-1140.43Charged multivesicular body protein 4b OS=Mus musc... [more]
CHM4B_HUMAN2.429e-1140.43Charged multivesicular body protein 4b OS=Homo sap... [more]
CHMP5_XENLA3.173e-1137.23Charged multivesicular body protein 5 OS=Xenopus l... [more]
CHM4B_XENTR3.173e-1139.36Charged multivesicular body protein 4b OS=Xenopus ... [more]
CHM4B_XENLA3.173e-1139.36Charged multivesicular body protein 4b OS=Xenopus ... [more]
SNF7_DEBHA5.412e-1137.63Vacuolar-sorting protein SNF7 OS=Debaryomyces hans... [more]
CHM4A_HUMAN7.068e-1137.62Charged multivesicular body protein 4a OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-767 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417837 ID=CF417837; Name=CF417837; organism=Citrus sinensis; type=EST; length=639bp
GTCAGAATCCCATTTTTTTTTTCCCTCNTTTTTATAATTACNGAGGTAAA
ATCGAGGGTTTTTGATTAATCGCGGAGANTCAAACATGTTTACTCGGCTT
TTTGGAAAACCTAAACAGGAAACCAATGCCTTAACCACGCTCGATAAGCT
AAATGAAACTCTTGAAATGCTAGAGAAAAAGGAGAAAGTACTCCTGAAAA
AGGCTTCTGTAGAGGTTGAAAAGGCCAAGGACTACTCCAAAGCAAAGAAC
AAAAGAGCGGCCATACAATGTTTGAAGAGGAAGAGGCTATACGAACAGCA
AATAGAGCAGCTTGGGAATTTCCAATTGCGCATTCATGATCAGATGATAA
TGCTAGAAGGTGCTAAAGCCACAACTGAGACTGTAGATGCATTGAGGACG
GGAGCATCGACAATGAAGGCTATGCAGAAAGCAACGAACATAGATGATGT
GGATAAGACCATGGATGAGATCAATGAGCAGACCGAGAACATGAAGCAGA
TTCAAGAAGCATTATCAACTCCTATTGGTGCTGCTGCTGATTTCNATGAG
GATGAATTGGAAGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGA
GCAGCTTCTACAGCCAGCCTACAACAGCTCCTGCTGCTC
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