CF417837
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11 Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 2 Query: 245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I EQ E +I A+S P+ Sbjct: 62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPV 155
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11 Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 2 Query: 245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I +Q E ++I A+S P+ Sbjct: 60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPV 153
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_HUMAN (Charged multivesicular body protein 4b OS=Homo sapiens GN=CHMP4B PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11 Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 2 Query: 245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I +Q E ++I A+S P+ Sbjct: 60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPV 153
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHMP5_XENLA (Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11 Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 2 Query: 236 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 517 SK K+ A++ LK+KR+YEQQ + L + ++ K T TVDA++ GA MK K ID ++ D++ + EN +IQEALS Sbjct: 57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALS 150
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11 Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 2 Query: 245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +I+ VD+ M +I +Q E ++I +A+S P+ Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPV 151
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11 Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 2 Query: 245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +I+ VD+ M +I +Q E ++I +A+S P+ Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPV 151
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_DEBHA (Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii GN=SNF7 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11 Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 2 Query: 248 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 NK A LKRK+ YE + ++ N + Q+ +EGA ET+ A++ GA MK + ++D V+ TMD+I EQ E +I EA+S P+ Sbjct: 56 NKALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPV 148
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4A_HUMAN (Charged multivesicular body protein 4a OS=Homo sapiens GN=CHMP4A PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11 Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 2 Query: 224 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526 AK Y KNKRAA+Q L+RK+ +EQQ+ Q + Q +E A E + + A +MK + +ID VD+ M +I EQ E +QI +A+S P+ Sbjct: 51 AKKYG-TKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPM 150 The following BLAST results are available for this feature:
BLAST of CF417837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417837 ID=CF417837; Name=CF417837; organism=Citrus sinensis; type=EST; length=639bpback to top |