CF417838

Overview
NameCF417838
Unique NameCF417838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.052e-42
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPVA++RVPC + GGIR TING+ YF+LVLITNVGGAGD+ AVS+KGS+T  WQ MSRNWGQNWQSNTYL GQSLSF+VT SDGRTV SY+V P  W FG+T+ G QF
Sbjct:  148 VPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.983e-40
Identity = 75/108 (69.44%), Postives = 90/108 (83.33%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+Y+RV C ++GGIR TINGHSYFNLVL+TNVGGAGDVHAV++K  R+  WQ +SRNWGQNWQS   L+GQ+LSF+VTT DGR+V S N  P  WSFG+T+SGAQF
Sbjct:  183 VPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.590e-40
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV+Y+RVPC +RGGIR TINGH YFNLVLITNV GAGD+   S+KGSRTGW  +SRNWGQNWQSN  L GQ+LSF+VT SD RT TS+N+ P++W FG+T+ G  FR
Sbjct:  149 VPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFR 256          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.771e-40
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV+Y+R+PC ++GGIR TING  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN  L GQSLSF+V TSDGR+ TS N+AP++W FG+TYSG  FR
Sbjct:  150 VPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFR 257          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.771e-40
Identity = 71/113 (62.83%), Postives = 93/113 (82.30%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG------WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+++RV C R+GG+R T+NGH+YFNLVL+TNVGGAGDV ++++KGS +G      WQPMSRNWGQNWQSN YL+G++LSF+VT  DGR++T  +VAPA W FG+T+ G QF
Sbjct:  147 VPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQF 259          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.771e-40
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV+Y+RVPC + GGIR T+NG  YFNLVL+TNV GAGD++ VS+KGS+T W  MSRNWGQNWQSN  L GQSLSF+VT SD R+ TS+NVAPA+W FG+T+SG  FR
Sbjct:  154 VPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFR 261          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VPV+Y+RVPC ++GG+R TING  YFNLVLITNV GAGD+   S+KG+ TGW PMSRNWGQNWQSN+ L GQ+LSF+VT SD RT TS+N APA W FG+T+ G  FR
Sbjct:  156 VPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFR 263          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 319
            VPV Y+RVPC ++GG+R TING  YF LVL++NVGG G + +VSIKGSRTGW  MSRNWG NWQSN YL+GQSLSFKVT+SDG+T+T  +VAPA W+FG+T+S +Q
Sbjct:  153 VPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQ 258          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIK---GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322
            VPV+Y+RV C R+GG+R TINGHSYFNLVL++NVGGAGDVHAV++K   G +  WQ M+RNWGQNWQS   L+GQ+LSF VTT D R+V SYNVAPA W+FG+T++G QF
Sbjct:  154 VPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQF 263          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39
Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325
            VP++Y+RV C + GGIR TINGH YFNLVLITNV GAGD+   S+KGS+TGW  ++RNWGQNWQSN  L GQSLSF+VT+SD RT TS+N+AP++W FG+T+ G  FR
Sbjct:  152 VPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFR 259          
The following BLAST results are available for this feature:
BLAST of CF417838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXPA2_ARATH8.052e-4273.15Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA5_ORYSJ1.983e-4069.44Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH2.590e-4068.52Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA9_ARATH5.771e-4068.52Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA6_ORYSJ5.771e-4062.83Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH5.771e-4068.52Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ7.537e-4067.59Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ7.537e-4067.92Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP21_ORYSJ7.537e-4067.27Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ARATH2.193e-3965.74Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-768 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417838 ID=CF417838; Name=CF417838; organism=Citrus sinensis; type=EST; length=650bp
TGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGCATCA
GGGTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCAAC
GTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGAAC
TGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAACA
CTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATGGC
CGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTGGCCG
AACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGAT
TGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGTATAT
TTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATTAATA
TAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGAAAA
AAAGGGGCTTATTTTAAAATGGCTTATTTTTTTTCATTTTGAATTGATTT
TTATGGNTGGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCTTGGG
GATCCTTTTTTTACCTTTCCTTTTTGGGGGGTTTTCTGTTGAAGTGCAAC
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