CF417838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 8.052e-42 Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPVA++RVPC + GGIR TING+ YF+LVLITNVGGAGD+ AVS+KGS+T WQ MSRNWGQNWQSNTYL GQSLSF+VT SDGRTV SY+V P W FG+T+ G QF Sbjct: 148 VPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.983e-40 Identity = 75/108 (69.44%), Postives = 90/108 (83.33%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+Y+RV C ++GGIR TINGHSYFNLVL+TNVGGAGDVHAV++K R+ WQ +SRNWGQNWQS L+GQ+LSF+VTT DGR+V S N P WSFG+T+SGAQF Sbjct: 183 VPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.590e-40 Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV+Y+RVPC +RGGIR TINGH YFNLVLITNV GAGD+ S+KGSRTGW +SRNWGQNWQSN L GQ+LSF+VT SD RT TS+N+ P++W FG+T+ G FR Sbjct: 149 VPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFR 256
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.771e-40 Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV+Y+R+PC ++GGIR TING YFNLVL+TNV GAGDV VS+KGS T W +SRNWGQNWQSN L GQSLSF+V TSDGR+ TS N+AP++W FG+TYSG FR Sbjct: 150 VPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFR 257
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.771e-40 Identity = 71/113 (62.83%), Postives = 93/113 (82.30%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG------WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+++RV C R+GG+R T+NGH+YFNLVL+TNVGGAGDV ++++KGS +G WQPMSRNWGQNWQSN YL+G++LSF+VT DGR++T +VAPA W FG+T+ G QF Sbjct: 147 VPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQF 259
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.771e-40 Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV+Y+RVPC + GGIR T+NG YFNLVL+TNV GAGD++ VS+KGS+T W MSRNWGQNWQSN L GQSLSF+VT SD R+ TS+NVAPA+W FG+T+SG FR Sbjct: 154 VPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFR 261
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40 Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VPV+Y+RVPC ++GG+R TING YFNLVLITNV GAGD+ S+KG+ TGW PMSRNWGQNWQSN+ L GQ+LSF+VT SD RT TS+N APA W FG+T+ G FR Sbjct: 156 VPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFR 263
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40 Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 319 VPV Y+RVPC ++GG+R TING YF LVL++NVGG G + +VSIKGSRTGW MSRNWG NWQSN YL+GQSLSFKVT+SDG+T+T +VAPA W+FG+T+S +Q Sbjct: 153 VPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQ 258
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40 Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIK---GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 322 VPV+Y+RV C R+GG+R TINGHSYFNLVL++NVGGAGDVHAV++K G + WQ M+RNWGQNWQS L+GQ+LSF VTT D R+V SYNVAPA W+FG+T++G QF Sbjct: 154 VPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQF 263
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39 Identity = 71/108 (65.74%), Postives = 88/108 (81.48%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 325 VP++Y+RV C + GGIR TINGH YFNLVLITNV GAGD+ S+KGS+TGW ++RNWGQNWQSN L GQSLSF+VT+SD RT TS+N+AP++W FG+T+ G FR Sbjct: 152 VPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFR 259 The following BLAST results are available for this feature:
BLAST of CF417838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417838 ID=CF417838; Name=CF417838; organism=Citrus sinensis; type=EST; length=650bpback to top |