CF417838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.643e-28 Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 310 VP+ Y++V C R GG+R ING +YF LVL+TN+ G+G + ++S+KGS TGW M+RNWG NWQ L GQ+LSF VT++ G+T+ + PA WSFG+T+S Sbjct: 131 VPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27 Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 313 VPV Y+R+ C R GG++ G+ YF ++L NVGGAGD+ + +KG +TGW M +NWGQNW + L GQ +SF+VTTSDG T NV P +W FG+T+ G Sbjct: 169 VPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27 Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 313 VPV Y+R+ C R GG++ G+ YF ++L NVGGAGD+ + +KG +TGW M +NWGQNW + L GQ +SF+VTTSDG T NV P +W FG+T+ G Sbjct: 162 VPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27 Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 310 VPV Y+RVPC ++GG+R T+ G +YF LVLI+NV G+G + +V +KG T P+SRNWG NWQS+ L GQ+L+F VT++ G+T+ N+ PA W FG+++S Sbjct: 151 VPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25 Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGR-TVTSYNVAPASWSFGRTY 307 +PV+Y+RV C + GGIR G+ Y+ LV + NVGG GD+ +++KGSRTGW MS NWG ++Q+ + L GQSLSF++T+ R T+ +YN APASWS G+TY Sbjct: 148 IPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25 Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY 307 VPV+Y++V C R+GGI+ TI G+ +N+V++ NVGGAGDV +++KG+ R W P+ R+WGQ W++ L G+SL+F+V T D R TS+ VAP W++ TY Sbjct: 182 VPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22 Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTT-SDGRTVTSYNVAPASWSFGRTY 307 VPV Y+RVPC R GG+R + G+ Y+ L + NV GAGDV + +K G GW MS NWG ++Q+ L GQ+LSFKVT+ + G+T+ + V PASW FG TY Sbjct: 156 VPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSF-GRTYSG 313 VPV ++RVPC + GG++ I G+ +F ++L NVGGAG V A+ IKG+RT W M +NWGQ W + L GQ LSF++TTSDG +V P W G+++ G Sbjct: 204 VPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 2 Query: 2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFKVTT--SDGRTVTSYNVAPASWSFGRTYSGA 316 VPV Y+RVPC R GG+R + G+ Y+ L+ + NVGGAGDV ++S+K S G W + NWG +Q L N L+ K+TT + +T+ + W G Y G+ Sbjct: 171 VPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.134e-11 Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2 Query: 8 VAYKRVPCGRRG---GIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSL----SFKVTTSDGRTVTSYNVAPASWSFGRTY 307 V Y+RVPC G RV + ++ VLI G GD++AV + + GW PM +NWG W+ N+ G++L S ++T+ G+ + + NV PASW G TY Sbjct: 180 VQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285 The following BLAST results are available for this feature:
BLAST of CF417838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417838 ID=CF417838; Name=CF417838; organism=Citrus sinensis; type=EST; length=650bpback to top |