CF417838

Overview
NameCF417838
Unique NameCF417838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.643e-28
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 310
            VP+ Y++V C R GG+R  ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  131 VPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 313
            VPV Y+R+ C R GG++    G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF+VTTSDG T    NV P +W FG+T+ G
Sbjct:  169 VPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 313
            VPV Y+R+ C R GG++    G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF+VTTSDG T    NV P +W FG+T+ G
Sbjct:  162 VPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27
Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 310
            VPV Y+RVPC ++GG+R T+ G +YF LVLI+NV G+G + +V +KG  T   P+SRNWG NWQS+  L GQ+L+F VT++ G+T+   N+ PA W FG+++S
Sbjct:  151 VPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGR-TVTSYNVAPASWSFGRTY 307
            +PV+Y+RV C + GGIR    G+ Y+ LV + NVGG GD+  +++KGSRTGW  MS NWG ++Q+ + L GQSLSF++T+   R T+ +YN APASWS G+TY
Sbjct:  148 IPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY 307
            VPV+Y++V C R+GGI+ TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++   L G+SL+F+V T D R  TS+ VAP  W++  TY
Sbjct:  182 VPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTT-SDGRTVTSYNVAPASWSFGRTY 307
            VPV Y+RVPC R GG+R  + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+   L GQ+LSFKVT+ + G+T+ +  V PASW FG TY
Sbjct:  156 VPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSF-GRTYSG 313
            VPV ++RVPC + GG++  I G+ +F ++L  NVGGAG V A+ IKG+RT W  M +NWGQ W +   L GQ LSF++TTSDG      +V P  W   G+++ G
Sbjct:  204 VPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 2
Query:    2 VPVAYKRVPCGRRGGIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFKVTT--SDGRTVTSYNVAPASWSFGRTYSGA 316
            VPV Y+RVPC R GG+R  + G+ Y+ L+ + NVGGAGDV ++S+K S  G  W   + NWG  +Q    L N   L+ K+TT  +  +T+   +     W  G  Y G+
Sbjct:  171 VPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280          
BLAST of CF417838 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.134e-11
Identity = 40/107 (37.38%), Postives = 59/107 (55.14%), Query Frame = 2
Query:    8 VAYKRVPCGRRG---GIRVTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSL----SFKVTTSDGRTVTSYNVAPASWSFGRTY 307
            V Y+RVPC   G     RV    + ++  VLI    G GD++AV +  +  GW PM +NWG  W+ N+   G++L    S ++T+  G+ + + NV PASW  G TY
Sbjct:  180 VQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285          
The following BLAST results are available for this feature:
BLAST of CF417838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXP20_ORYSJ8.643e-2852.43Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH1.129e-2750.00Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH1.129e-2750.00Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP15_ORYSJ2.515e-2751.46Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH1.057e-2552.43Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP26_ORYSJ2.354e-2548.54Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ2.436e-2250.00Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP24_ARATH2.436e-2246.67Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP17_ORYSJ1.582e-1339.09Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ1.134e-1137.38Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-768 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417838 ID=CF417838; Name=CF417838; organism=Citrus sinensis; type=EST; length=650bp
TGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGCATCA
GGGTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCACCAAC
GTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTAGAAC
TGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGCAACA
CTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGATGGC
CGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTGGCCG
AACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAGAGAT
TGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGTATAT
TTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATTAATA
TAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGAAAA
AAAGGGGCTTATTTTAAAATGGCTTATTTTTTTTCATTTTGAATTGATTT
TTATGGNTGGCGTGGGGTGTCTAATTATGGGATCCTCTTATTATCTTGGG
GATCCTTTTTTTACCTTTCCTTTTTGGGGGGTTTTCTGTTGAAGTGCAAC
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