CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.008e-45
Identity = 90/138 (65.22%), Postives = 115/138 (83.33%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQS+RLTVED  +VE I+++IAG+QQ+YTQSGGVRPFG+STLIVGFD   G P+LYQTDPSG++S+WKA A GR+S S+ EFLE NY + S +E+IKLA+RALLE+VESG KNIE+AV+  ++ +  LDE EID +V
Sbjct:   93 ECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDT-DGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNYTDVSEEESIKLAVRALLEIVESGNKNIEIAVIRNKQPIVLLDEQEIDKLV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.426e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRLTVEDPVTVE ITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLE NY + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L+  EI+  V
Sbjct:   90 ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.426e-45
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRLTVEDPVTVE ITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLE NY + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L+  EI+  V
Sbjct:   90 ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 92/141 (65.25%), Postives = 113/141 (80.14%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSH+LTVEDPVTVE ITR+IA L+QKYTQS G RPFG+S LIVGFD   G+P LYQTDPSGT+ AWKANA GR++ ++REFLE NY E   ++ +E IKLAI+ALLEVV+SGGKNIE+A++ R++ LK     EI+  V
Sbjct:   92 ECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD-DGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEV 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRLTVEDPVTVE ITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLE +Y + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L+  EI+  V
Sbjct:   90 ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIERYV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 94/141 (66.67%), Postives = 112/141 (79.43%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRLTVEDPVTVE ITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLE +Y + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L+  EI+  V
Sbjct:   90 ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIERYV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.700e-44
Identity = 92/141 (65.25%), Postives = 110/141 (78.01%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSH+LTVEDPVTVE ITR+IA L+QKYTQS G RPFG+S LIVGFD   G+P LYQTDPSGT+ AWKANA GR++ ++REFLE NY E    S  E IKLAI+ALLEVV+SGGKNIE+A++ R + LK     E++  V
Sbjct:   92 ECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD-DGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYV 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.900e-44
Identity = 94/141 (66.67%), Postives = 110/141 (78.01%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRLTV DPVTVE ITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLE NY + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L   EI+  V
Sbjct:   96 ECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILSPEEIEKYV 235          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.900e-44
Identity = 94/141 (66.67%), Postives = 111/141 (78.72%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRLTVED VTVE ITRYIA L+Q+YTQS G RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+REFLE NY + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L+  EI+  V
Sbjct:   90 ECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEEYV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.439e-43
Identity = 91/141 (64.54%), Postives = 109/141 (77.30%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSH+LTVEDPVTVE ITR+IA L+QKYTQS G RPFG+S LIVGFD   G+  LYQTDPSGT+ AWKANA GR++ ++REFLE NY E    S  E IKLAI+ALLEVV+SGGKNIE+A++ R + LK     E++  V
Sbjct:   98 ECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDD-DGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYV 237          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSA7_DICDI2.008e-4565.22Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA7_MOUSE3.426e-4567.38Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_BOVIN3.426e-4567.38Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7L_MOUSE1.302e-4465.25Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7B_XENLA1.302e-4466.67Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA1.302e-4466.67Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7L_MACFA1.700e-4465.25Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA7_RAT2.900e-4466.67Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA7_PONAB2.900e-4466.67Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA7L_HUMAN1.439e-4364.54Proteasome subunit alpha type-7-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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