CF417839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11 Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 2 Query: 38 VTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK---ETSGQETIKLAIRALLEVVESGGK--NIEVAVMTREK-GLKQLDEAEIDA 409 + V+ + + IA + Q YTQ+ +RP G +++G D G P +Y+ DP+G + +KA A G FLE K + + ++T++ AI L V+ K IEV V+T E + L EAEIDA Sbjct: 109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG-PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11 Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 2 Query: 38 VTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK---ETSGQETIKLAIRALLEVVESGGK--NIEVAVMTREK-GLKQLDEAEIDA 409 + V+ + + IA + Q YTQ+ +RP G +++G D G P +Y+ DP+G + +KA A G FLE K + + ++T++ AI L V+ K IEV V+T E + L EAEIDA Sbjct: 109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG-PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11 Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMR-EFLEXNYKETSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 + Q+HR T ++P +E T+ I L ++ + RPFG++ LI G D + P LY ++PSGT+ ++A A G S + E ++ +K+ + +E L ++ L +V+E KN+++A +T E G ++ E+ Sbjct: 95 QTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHG--PQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEM 235
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11 Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 2 Query: 5 CQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGV-----RPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREK 373 C SH + ++VE + +Y++ L ++ + RPFG+S +I GFD P LY DPSG++ ++KA A G + LE Y+E SG ++++ + L +V++ N+EV V+T+E+ Sbjct: 92 CISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE---PRLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVMKDKISKDNVEVVVVTQEE 219
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11 Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNY-KETSGQETIKLAIRALLEVVES--GGKNIEVA 355 E Q+HR + +P+TVE T+ + L ++ + RPFG+S LI G D PSLY TDPSGTF A A G S L+ + K+ S QE +A+ L +V+E N+++A Sbjct: 95 ETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDE--NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEEKVTPNNVDIA 216 The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bpback to top |