CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 2
Query:   38 VTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK---ETSGQETIKLAIRALLEVVESGGK--NIEVAVMTREK-GLKQLDEAEIDA 409
            + V+ + + IA + Q YTQ+  +RP G   +++G D   G P +Y+ DP+G +  +KA A G        FLE   K   + + ++T++ AI  L  V+    K   IEV V+T E    + L EAEIDA
Sbjct:  109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG-PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = 2
Query:   38 VTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK---ETSGQETIKLAIRALLEVVESGGK--NIEVAVMTREK-GLKQLDEAEIDA 409
            + V+ + + IA + Q YTQ+  +RP G   +++G D   G P +Y+ DP+G +  +KA A G        FLE   K   + + ++T++ AI  L  V+    K   IEV V+T E    + L EAEIDA
Sbjct:  109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG-PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 42/143 (29.37%), Postives = 77/143 (53.85%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMR-EFLEXNYKETSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            + Q+HR T ++P  +E  T+ I  L  ++ +          RPFG++ LI G D +   P LY ++PSGT+  ++A A G  S   + E ++  +K+ + +E   L ++ L +V+E     KN+++A +T E G    ++ E+
Sbjct:   95 QTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHG--PQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEGGFHIYNDEEM 235          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 2
Query:    5 CQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGV-----RPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREK 373
            C SH     + ++VE + +Y++ L  ++ +         RPFG+S +I GFD     P LY  DPSG++ ++KA A G     +   LE  Y+E SG  ++++  +  L +V++      N+EV V+T+E+
Sbjct:   92 CISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE---PRLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVMKDKISKDNVEVVVVTQEE 219          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNY-KETSGQETIKLAIRALLEVVES--GGKNIEVA 355
            E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGTF    A A G  S      L+  + K+ S QE   +A+  L +V+E      N+++A
Sbjct:   95 ETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDE--NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEEKVTPNNVDIA 216          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSA6_HUMAN7.209e-1134.62Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN7.209e-1134.62Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA5_SCHPO7.209e-1129.37Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA5_ENCCU7.209e-1131.30Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA5A_ARATH9.416e-1136.29Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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