CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.140e-40
Identity = 81/142 (57.04%), Postives = 104/142 (73.24%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE----TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            E QSHRLT+EDPVTVE +TRY+AG+QQ+YTQSGGVRPFG+STLI GFDP    P LYQT+PSG +S+W A   GRNS ++REFLE NY       + +E +KL +R+LLEVV++G KNIE+ V+  +  +  L   EI+  V
Sbjct:   92 EAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYV 233          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.140e-40
Identity = 89/136 (65.44%), Postives = 104/136 (76.47%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAE 400
            ECQSHRLTVEDPVTVE ITRYIA L+Q+YTQS   RPFG+S LIVGFD + G P LYQTDPSGT+ AWKANA GR + S+R   E NY + + +    TIKL I+ALLEVV+SGGKNIE+AVM R++ LK L   E
Sbjct:   90 ECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFD-FDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILTSPE 224          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.649e-37
Identity = 76/139 (54.68%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            E Q+H+L + DPV++E +TRY+AG+QQKYTQSGGVRPFG+STLI GFD     P +YQT+P+G ++AWKA A GR S + RE+LE N+KE  S  ETI LA+ +LLEVV++   NIE+A+M   K ++ L   +ID +V
Sbjct:   91 EAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLEVVQTASGNIELAIMDPGKDVEFLHSDKIDTIV 229          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.796e-36
Identity = 82/137 (59.85%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEI 403
            ECQSHRL VEDPVT+E ITRYIA L+QKYTQS G RPFG+S LI GFD   G P L+QT+PSG F  +KANATG ++ ++REF E  Y+E   ++ +  +KLAIRALLEV +SG  N+EVA+M   K LK LD   I
Sbjct:   90 ECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDA-DGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQSGQHNLEVAIMENGKPLKMLDRKVI 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.461e-35
Identity = 80/133 (60.15%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLD 391
            ECQSHRL VEDPVT+E ITR+IA L+QKYTQS G RPFG+S LI GFD   G   L+QT+PSG F  +KANATGR++  +REF E +Y+E    +    +KLAIRALLEV +SG  N+EVA+M   K LK LD
Sbjct:   92 ECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDA-DGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQSGQNNLEVAIMENGKPLKMLD 223          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 69/144 (47.92%), Postives = 99/144 (68.75%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE---TIKLAIRALLEVVESGGKNIEVAVMTR---EKGLKQLDEAEIDAMV 415
            ECQS++LT+EDPVTV  I+RYIA  +Q++TQS G RPFG+S LI GFD + G P L++T+PSG +  + ANATGR    +RE+LE  Y E +  +   T+KL +++L +VV  G +NIE+AVM +   E   + L   EI+A++
Sbjct:   91 ECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFD-HDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPGSQNIEIAVMKKVNDELQQRVLSTEEIEALL 233          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.442e-29
Identity = 72/141 (51.06%), Postives = 92/141 (65.25%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE---TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            ECQSHRL  E+ VT+E ITRY+A L+QKYTQ  G RPFG+S LI G D   G   L+ T+PSG F  +KA ATGR +N++REF E  Y +   T+  + IKLA+RALLEV +     +EVAV+   K +K LD   I  +V
Sbjct:   92 ECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDA-DGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEVTQMSQMRLEVAVLENGKPMKMLDSVVISEIV 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLD 391
            ECQ  RL+ ED + V+ + RY+A +QQ+ TQS G RP+G+ST+I GF+   G P L++T+PSGT SAW A A GRN   + EF+E NY++  +    +  AI+ALLE VESG KNIE+ V+ R K     D
Sbjct:   90 ECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNE-NGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMTRDRCVHFAIKALLEAVESGSKNIELLVLERGKAAYMSD 219          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.727e-26
Identity = 67/134 (50.00%), Postives = 84/134 (62.69%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE--TSGQE--TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLD 391
            E QSHRL  E P TVE ITRYIA L+Q YTQS G RPFGLS L+ GFD   G P L+QTDPSG F  W+AN TGR+S  +R+++E +  E  T   E   IK  +R L+ V       +EVAV+   + L+ +D
Sbjct:   92 EAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDE-DGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTLVSVSSLNHTQMEVAVLKYRQPLRMID 224          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.022e-21
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 2
Query:   11 SHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVE-SGGKNIEVAVMT-REKGLKQLDEAEIDAMV 415
            SHR   ++P+ VE +T+ +  L+Q+YTQ GG RPFG++ LI G D +     LYQTDPSG +  + A A G  S ++ EFLE NYK +    E I+LA++AL   VE +   N+EVA  T  EK ++++ + E+ +++
Sbjct:   99 SHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRHGA--RLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYATIEEKKMRKMSQDEVASLL 234          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSA7_YEAST1.140e-4057.04Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA7_CHICK1.140e-4065.44Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_SCHPO7.649e-3754.68Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA71_DROVI3.796e-3659.85Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA71_DROME2.461e-3560.15Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA7_CAEEL2.018e-2947.92Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA72_DROME3.442e-2951.06Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA7_TRYBB2.466e-2748.85Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA73_DROME2.727e-2650.00Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSMA_PYRAE2.022e-2141.30Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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