CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21
Identity = 58/124 (46.77%), Postives = 73/124 (58.87%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETS----GQETIKLAIRALLEVVESGGKNIEVAVM 361
            E QSHRL  + P +VE ITRY+A L+Q YTQS   RPFG+S LI GFD   G P L+QTDPSG +  W AN TGR   ++ E+LE N    S        +K  +RAL         +IE+AV+
Sbjct:   89 EAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDE-DGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASIELAVL 211          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 60/138 (43.48%), Postives = 83/138 (60.14%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEID 406
            E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E  YK + S +E IKLAI AL + +E    +NIEVA++T ++K  ++L   EI+
Sbjct:   97 EAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPSAENIEVAIITVKDKKFRKLSREEIE 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.814e-20
Identity = 59/138 (42.75%), Postives = 83/138 (60.14%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEID 406
            E Q HRLT  +P  +  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E  Y+ + +  E IKLAI AL + +E    +NIEVAV+T ++K  ++L + EI+
Sbjct:   97 EAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPSAENIEVAVITVKDKKFRKLSKEEIE 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q++ LT ++P+ V  + + +A L Q+YTQSGGVRPFG+S LI G+D     P LYQ+DPSG + AWKA A G+N+ + + FLE  Y E     + +  AI  L E  E      NIE+ +   + G ++LD A I
Sbjct:   95 QTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWD--NDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGKMTADNIEIGICD-QNGFQRLDPASI 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.110e-19
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEID 406
            E Q +RLT  +P  V  I + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG + AWKA A G   N+     E  Y++    ++ IKLA+ AL + +E+    NIEVAV+T ++K  ++L   EI+
Sbjct:   97 EAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR---PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENPSADNIEVAVITVKDKKFRKLTRDEIE 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D   G P L+Q+DPSG + AWKA A G+N  + + FLE  Y E    ++ I  AI  L E  E      NIEV +   E G K+L  AE+
Sbjct:   95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFKRLTPAEV 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 2
Query:   29 EDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEID 406
            ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLE  Y E     + I  AI  L E  E     KNIE+  +  +K  + L  AEID
Sbjct:  102 KEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKG--PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDKVFRVLTPAEID 228          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 2
Query:   29 EDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEID 406
            ++P+ V  + R  A + Q++TQSGGVRPFG+S L+ G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLE  Y E     + I  AI  L E  E     KNIE+  +  +K  + L  AEID
Sbjct:  102 KEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKG--PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADKVFRVLTPAEID 228          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19
Identity = 50/130 (38.46%), Postives = 83/130 (63.85%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGLKQL 388
            HRL  ++P++++ +T+ I+ ++Q YTQ GGVRPFG++ ++ G D   GV  L+ T+PSG F  ++A A G+   +  ++LE NYKE  S +ETI LA+ AL   ++ G K    N+E+   T+E   +++
Sbjct:  101 HRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVD--RGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTLKPGEKLGPGNVEIGFATKEGQFRKM 228          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            + Q +    ++ + V  + R  A + Q++TQSGGVRPFG+S LI G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLE  Y E     + I  AI  L E  E      NIE+ ++  ++  K L  AEI
Sbjct:   93 QAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDD--NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEI 227          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSA73_DROVI3.450e-2146.77Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSMA_PYRHO7.685e-2143.48Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_PYRAB3.814e-2042.75Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSA2_DROME4.981e-2042.22Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSMA_PYRFU1.110e-1941.30Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSA2_XENLA1.449e-1942.22Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2B_ARATH1.449e-1941.86Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH1.449e-1941.86Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA_METS52.472e-1938.46Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA2_ORYSJ4.217e-1938.69Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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