CF417839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19 Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 + Q + ++ + V + R A + Q++TQSGGVRPFG+S LI G+D P LYQ DPSG++ +WKA+A G+N ++ + FLE Y E + I AI L E E NIE+ ++ ++ K L AEI Sbjct: 93 QAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDD--NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEI 227
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19 Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415 Q + L ++P+ E + + ++Q YTQ GG RPFG+S L +G+D + G LYQ+DPSG + WKA G NS + L+ +YKE G+ T+K LAI+ L ++V + + +E+A +TRE G ++ L + E++ ++ Sbjct: 95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19 Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 2 Query: 11 SHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIKLAIRALLEV--VESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415 S+R + + + VE + + + +Q+YTQ GG RPFG+S L +G+D + G LYQ+DPSG ++ WKA G N + L+ YK + +E +LAI+ L + V+ + +E+AV+TR G L++L E+DA++ Sbjct: 96 SYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGY-QLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTRRDGKTVLEELTTKEVDALI 234
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19 Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415 Q + L ++P+ E + + ++Q YTQ GG RPFG+S L +G+D + G LYQ+DPSG + WKA G NS + L+ +YKE G+ T+K LAI+ L ++V + + +E+A +TRE G ++ L + E++ ++ Sbjct: 95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19 Identity = 56/142 (39.44%), Postives = 84/142 (59.15%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVESG--GKNIEVA-VMTREKGLKQLDEAEIDAMV 415 E Q +RLT ++P+TV+++ + I +Q+YTQ GGVRPFG+S LI G D VP LY+TDPSG +KA A G N++ EF E Y+ + S + + L + A+ +ES +NIEV V ++ K++ E+ V Sbjct: 95 EAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE---VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYV 233
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19 Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415 Q + L ++P+ E + + ++Q YTQ GG RPFG+S L +G+D + G LYQ+DPSG + WKA G NS + L+ +YKE G+ T+K LA++ L ++V + + +E+A +TRE G ++ L + E++ ++ Sbjct: 95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19 Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415 Q + L ++P+ E + + ++Q YTQ GG RPFG+S L +G+D + G LYQ+DPSG + WKA G NS + L+ +YKE G+ T+K LA++ L ++V + + +E+A +TRE G ++ L + E++ ++ Sbjct: 95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGKTVIRVLKQKEVEQLI 237
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP L+ T+PSG + ++A A G+ + EFLE NYKE + +ETI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP LY T+PSG + ++A A G+ + EFLE NYKE + ++TI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18 Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D VP LY T+PSG + ++A A G+ + EFLE NYKE + ++TI LA++AL ++ K +E+ + + GL Sbjct: 101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225 The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bpback to top |