CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            + Q +    ++ + V  + R  A + Q++TQSGGVRPFG+S LI G+D     P LYQ DPSG++ +WKA+A G+N ++ + FLE  Y E     + I  AI  L E  E      NIE+ ++  ++  K L  AEI
Sbjct:   93 QAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDD--NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEI 227          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415
            Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+ +YKE  G+ T+K    LAI+ L   ++V +   + +E+A +TRE G   ++ L + E++ ++
Sbjct:   95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 2
Query:   11 SHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIKLAIRALLEV--VESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415
            S+R +  + + VE + + +   +Q+YTQ GG RPFG+S L +G+D + G   LYQ+DPSG ++ WKA   G N  +    L+  YK  + +E  +LAI+ L +   V+   + +E+AV+TR  G   L++L   E+DA++
Sbjct:   96 SYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGY-QLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTRRDGKTVLEELTTKEVDALI 234          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415
            Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+ +YKE  G+ T+K    LAI+ L   ++V +   + +E+A +TRE G   ++ L + E++ ++
Sbjct:   95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 56/142 (39.44%), Postives = 84/142 (59.15%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVESG--GKNIEVA-VMTREKGLKQLDEAEIDAMV 415
            E Q +RLT ++P+TV+++ + I   +Q+YTQ GGVRPFG+S LI G D    VP LY+TDPSG    +KA A G   N++ EF E  Y+ + S  + + L + A+   +ES    +NIEV  V   ++  K++   E+   V
Sbjct:   95 EAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDE---VPKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYV 233          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415
            Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+ +YKE  G+ T+K    LA++ L   ++V +   + +E+A +TRE G   ++ L + E++ ++
Sbjct:   95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 51/146 (34.93%), Postives = 86/146 (58.90%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIK----LAIRAL---LEVVESGGKNIEVAVMTREKG---LKQLDEAEIDAMV 415
            Q + L  ++P+  E +   +  ++Q YTQ GG RPFG+S L +G+D + G   LYQ+DPSG +  WKA   G NS +    L+ +YKE  G+ T+K    LA++ L   ++V +   + +E+A +TRE G   ++ L + E++ ++
Sbjct:   95 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGF-QLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE--GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGKTVIRVLKQKEVEQLI 237          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP L+ T+PSG +  ++A A G+   +  EFLE NYKE  + +ETI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLE NYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++PV+++ +T+ +A ++Q YTQ GGVRPFG++ +I G D    VP LY T+PSG +  ++A A G+   +  EFLE NYKE  + ++TI LA++AL   ++   K     +E+   + + GL
Sbjct:  101 HRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGID--KSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGL 225          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSA2_ORYSI4.217e-1938.69Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA4_HUMAN5.507e-1935.62Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_CAEEL5.507e-1936.43Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4_BOVIN5.507e-1935.62Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSMA_ARCFU7.193e-1939.44Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSA4_RAT7.193e-1934.93Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE7.193e-1934.93Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSMA_SULSO1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_SULIY1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.227e-1839.37Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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