CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G++   G P L+Q+DPSG + AWKA A G+N  + + FLE  Y E    ++ I  AI  L E  E      NIEV +   E G ++L   E+
Sbjct:   95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 403
            E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E  Y+ E + +E IKLA+ AL +++E    ++IEVAV++ +EK  K++   E+
Sbjct:   97 EAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEVAVISVKEKKFKKITPEEV 230          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403
            Q + L  ++P+    + + +A + Q+YTQSGGVRPFG+S LI G+D     P L+Q+DPSG + AWKA A G++  + + FLE  Y E    ++ I  AI  L E  E     +NIEV +   E G ++L  AE+
Sbjct:   95 QQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEENIEVGI-CNEAGFRRLSPAEV 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.953e-18
Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIKLAIRALLEVVESGGK------NIEVAVMTREKGLKQLDEAEI 403
            E + +    ++ + V  + R +A + Q++TQSGGVRPFG+S L+ GFD     P LYQ DPSG++ AWKA A G+N  S + FLE  Y   S    I+ AI+  L  ++ G +      N+E+A++ + +  K L  A+I
Sbjct:   91 ESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKG--PHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRY---SDDLEIEDAIQTALITIKEGFETQLTEFNMELAIIGKNQEFKILTPAQI 225          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.039e-17
Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEIDAMV 415
            E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E +Y++  G+ + IKLAI AL + +E    + IEVA +T  EK  K+L   E++  +
Sbjct:   97 EAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELEKYI 234          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 403
            E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P LY+TDPSG +  W+A A G   N+     E +Y +    E  IKLAI AL + +E    ++IEVA +T ++K  K++D+ E+
Sbjct:   97 EAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPSPESIEVAYITMKDKRWKKMDKEEV 230          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEID 406
            E Q +RLT  +PV +  + + I  L+Q +TQ GGVRPFG + L+ G +     P L++TDPSG +  WKA A G   N+     E +Y++  G+ + IKLAI AL + +E    + IEVA +T  EK  K+L   E++
Sbjct:   97 EAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELE 231          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQET-IKLAIRALLEVVESG----GKNIEVAVMTREKGLKQLDEAEIDA 409
            + Q ++L  ++P+ VE +T+ +    Q+YTQ GG RPFG++ +I G +   G P LY+TDPSGT   W+A A G +   ++E+LE +Y E+   E  I LA+ AL  V +      G  +    +  + G  QL + EI+A
Sbjct:   97 QAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIED--GEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATVTVDDDDGFSQLSDEEIEA 235          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVESGGK 340
            HRL  ++P+++E +T+ I+ ++Q YTQ GGVRPFG++ ++ G D     P L  T+PSG F  + A A G+   +  E+LE NYKE    Q TI LA+RAL+  ++ G K
Sbjct:  101 HRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEID 406
            + Q +RL  ++P +VE +T+ I    Q+YTQ+GG RPFG++ L+ G +   G P L++TDPSGT   W+A A G +   ++ FLE  Y E    E  I+LA+RAL  V E G     V + T +   +Q ++   D
Sbjct:   96 QSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATIDVESEQFEKLAED 229          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSA2_BOVIN4.662e-1840.00Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSMA_THESM6.089e-1839.42Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSA2_CARAU6.089e-1840.00Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2_DICDI7.953e-1837.86Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_PYRKO1.039e-1739.01Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_THEON1.356e-1739.42Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_THEK11.356e-1739.86Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_NATPD1.772e-1736.17Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_SULAC2.314e-1742.73Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA2_HALMA3.022e-1738.24Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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