CF417839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18 Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G++ G P L+Q+DPSG + AWKA A G+N + + FLE Y E ++ I AI L E E NIEV + E G ++L E+ Sbjct: 95 QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEV 226
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18 Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 403 E Q +RLT +PV + + + I L+Q +TQ GGVRPFG + L+ G + P L++TDPSG + WKA A G N+ E Y+ E + +E IKLA+ AL +++E ++IEVAV++ +EK K++ E+ Sbjct: 97 EAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEVAVISVKEKKFKKITPEEV 230
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18 Identity = 54/135 (40.00%), Postives = 79/135 (58.52%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKGLKQLDEAEI 403 Q + L ++P+ + + +A + Q+YTQSGGVRPFG+S LI G+D P L+Q+DPSG + AWKA A G++ + + FLE Y E ++ I AI L E E +NIEV + E G ++L AE+ Sbjct: 95 QQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWD--EDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEENIEVGI-CNEAGFRRLSPAEV 226
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.953e-18 Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQETIKLAIRALLEVVESGGK------NIEVAVMTREKGLKQLDEAEI 403 E + + ++ + V + R +A + Q++TQSGGVRPFG+S L+ GFD P LYQ DPSG++ AWKA A G+N S + FLE Y S I+ AI+ L ++ G + N+E+A++ + + K L A+I Sbjct: 91 ESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKG--PHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRY---SDDLEIEDAIQTALITIKEGFETQLTEFNMELAIIGKNQEFKILTPAQI 225
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.039e-17 Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEIDAMV 415 E Q +RLT +PV + + + I L+Q +TQ GGVRPFG + L+ G + P L++TDPSG + WKA A G N+ E +Y++ G+ + IKLAI AL + +E + IEVA +T EK K+L E++ + Sbjct: 97 EAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELEKYI 234
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17 Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEI 403 E Q +RLT +PV + + + I L+Q +TQ GGVRPFG + L+ G + P LY+TDPSG + W+A A G N+ E +Y + E IKLAI AL + +E ++IEVA +T ++K K++D+ E+ Sbjct: 97 EAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN---DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPSPESIEVAYITMKDKRWKKMDKEEV 230
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17 Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQ-ETIKLAIRALLEVVES-GGKNIEVAVMTR-EKGLKQLDEAEID 406 E Q +RLT +PV + + + I L+Q +TQ GGVRPFG + L+ G + P L++TDPSG + WKA A G N+ E +Y++ G+ + IKLAI AL + +E + IEVA +T EK K+L E++ Sbjct: 97 EAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNE---KPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVAYITMDEKRWKKLPREELE 231
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17 Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQET-IKLAIRALLEVVESG----GKNIEVAVMTREKGLKQLDEAEIDA 409 + Q ++L ++P+ VE +T+ + Q+YTQ GG RPFG++ +I G + G P LY+TDPSGT W+A A G + ++E+LE +Y E+ E I LA+ AL V + G + + + G QL + EI+A Sbjct: 97 QAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIED--GEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDSLTPEGIGLATVTVDDDDGFSQLSDEEIEA 235
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17 Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVVESGGK 340 HRL ++P+++E +T+ I+ ++Q YTQ GGVRPFG++ ++ G D P L T+PSG F + A A G+ + E+LE NYKE Q TI LA+RAL+ ++ G K Sbjct: 101 HRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDK-GKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATLKPGEK 209
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17 Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVESGGKNIEVAVMTREKGLKQLDEAEID 406 + Q +RL ++P +VE +T+ I Q+YTQ+GG RPFG++ L+ G + G P L++TDPSGT W+A A G + ++ FLE Y E E I+LA+RAL V E G V + T + +Q ++ D Sbjct: 96 QSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIE--DGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATIDVESEQFEKLAED 229 The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bpback to top |