CF417839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17 Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379 HRL ++P+ ++ +T+ ++ ++Q YTQ GGVRPFG++ +I G D P L T+PSG F + A A G+ + E+ E NY+E + Q+TI L IRAL ++ G K NIEV + G+ Sbjct: 101 HRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGM 226
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17 Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 5 CQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNY-KETSGQETIKLAIRALLE 319 CQ +RLT +P+ + + R I+ L Q++TQSGGVRPFG S L+ G D LYQ DPSGTF WKA + G+ S R FLE Y E ++ + A+ L E Sbjct: 92 CQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGN--HLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKE 195
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17 Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 2 Query: 29 EDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKET----SGQETIKLAIRALLEVVESGGKNIEVAV 358 E+ T++ +T IA + Q+YTQSGGVRPFG S LI G+D G P L+Q DPSG + AWKA A G+N + + FLE + E G T L +R + V N+EVAV Sbjct: 99 EEMPTIQLVTD-IAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVAV 210
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16 Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331 Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+ +Y++ + +E + LA++ L + ++S Sbjct: 95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16 Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331 Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+ +Y++ + +E + LA++ L + ++S Sbjct: 95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16 Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331 Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+ +Y++ + +E + LA++ L + ++S Sbjct: 95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16 Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2 Query: 8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331 Q + L+ ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG +S WKA A G NS + + L+ +Y++ + +E + LA++ L + ++S Sbjct: 95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16 Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 2 Query: 53 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVMT 364 + + IA + Q+ TQSGGVRPFG+S L+ G D PSLYQ DPSGT+ AWKA A G++S + + FLE Y E + + AI AL E E NIE+AV++ Sbjct: 110 LVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKG--PSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELTEDNIEIAVVS 214
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16 Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKG 376 + Q R+ ++P+ V +T+ + Q+YTQ GG RPFG++ LI G + G P L++TDPSGT + WKA A G N ++EFLE Y S + I LA+RAL E E G + V ++ + G Sbjct: 97 QSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEG--GEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTG 222
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16 Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKG 376 + Q R+ ++P+ V +T+ + Q+YTQ GG RPFG++ LI G + G P L++TDPSGT + WKA A G N ++EFLE Y S + I LA+RAL E E G + V ++ + G Sbjct: 97 QSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEG--GEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTG 222 The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bpback to top |