CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 2
Query:   14 HRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVESGGK----NIEVAVMTREKGL 379
            HRL  ++P+ ++ +T+ ++ ++Q YTQ GGVRPFG++ +I G D     P L  T+PSG F  + A A G+   +  E+ E NY+E  + Q+TI L IRAL   ++ G K    NIEV     + G+
Sbjct:  101 HRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGID-RGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTLKPGEKLAPSNIEVGFADVDSGM 226          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    5 CQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNY-KETSGQETIKLAIRALLE 319
            CQ +RLT  +P+ +  + R I+ L Q++TQSGGVRPFG S L+ G D       LYQ DPSGTF  WKA + G+ S   R FLE  Y  E   ++ +  A+  L E
Sbjct:   92 CQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGN--HLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKE 195          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   29 EDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKET----SGQETIKLAIRALLEVVESGGKNIEVAV 358
            E+  T++ +T  IA + Q+YTQSGGVRPFG S LI G+D   G P L+Q DPSG + AWKA A G+N  + + FLE  + E      G  T  L +R   + V     N+EVAV
Sbjct:   99 EEMPTIQLVTD-IAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVAV 210          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331
            Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+ +Y++  + +E + LA++ L + ++S
Sbjct:   95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331
            Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+ +Y++  + +E + LA++ L + ++S
Sbjct:   95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDS 202          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331
            Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+ +Y++  + +E + LA++ L + ++S
Sbjct:   95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    8 QSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES 331
            Q + L+ ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +S WKA A G NS + +  L+ +Y++  + +E + LA++ L + ++S
Sbjct:   95 QRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDS 202          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   53 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVMT 364
            + + IA + Q+ TQSGGVRPFG+S L+ G D     PSLYQ DPSGT+ AWKA A G++S + + FLE  Y  E    + +  AI AL E  E      NIE+AV++
Sbjct:  110 LVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKG--PSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELTEDNIEIAVVS 214          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKG 376
            + Q  R+  ++P+ V  +T+ +    Q+YTQ GG RPFG++ LI G +   G P L++TDPSGT + WKA A G N   ++EFLE  Y    S  + I LA+RAL E  E    G  + V ++  + G
Sbjct:   97 QSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEG--GEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTG 222          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVMTREKG 376
            + Q  R+  ++P+ V  +T+ +    Q+YTQ GG RPFG++ LI G +   G P L++TDPSGT + WKA A G N   ++EFLE  Y    S  + I LA+RAL E  E    G  + V ++  + G
Sbjct:   97 QSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEG--GEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEGREDALSGDGVGVGIVDADTG 222          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSMA_SULTO5.155e-1738.58Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA2_TRYBB5.155e-1744.34Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA2_CAEEL6.732e-1744.74Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA4B_ORYSJ1.148e-1637.61Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI1.148e-1637.61Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ1.148e-1637.61Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI1.148e-1637.61Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA2_SCHPO1.148e-1646.73Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSMA_HALSA1.959e-1639.06Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.959e-1639.06Proteasome subunit alpha OS=Halobacterium salinaru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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