CF417839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16 Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVV--ESGGKNIEVAVM-TREKGLKQLDEAEIDAMV 415 E Q +++T +P+ V+ +++ + + Q YTQ+GGVRPFG S LI+G Y G+ L++TDPSG +KA A G ++ + E YK+ E I LA+ A+ E E+ N+E+AV+ E+ +L + E+ + Sbjct: 96 EAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFG-SALIIG-GVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHETTANNVEIAVIKCGEEVYTKLSQEEVQTFI 235
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16 Identity = 40/111 (36.04%), Postives = 70/111 (63.06%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES 331 + Q + + ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D G LY +DPSG + WKA A G N+ + + L+ +YK + + ++ +KLA++AL + ++S Sbjct: 93 QAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTMDS 202
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16 Identity = 39/111 (35.14%), Postives = 69/111 (62.16%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES 331 + Q + ++P+ VE + + + +Q YTQ GG+RPFG+S L G+D + G LY +DPSG + WKA A G N+ + + L+ +YK + + +E ++LA++ L + ++S Sbjct: 93 QAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDS 202
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 2 Query: 38 VTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVM 361 + V+D+ R + Q+ TQSGGVRP+G+S LI G+D G P LYQ DPSG++ WKA A G+N+ + + FLE Y E ++ + +A+ L E +E G IE+ ++ Sbjct: 109 ILVQDVAR----VMQEATQSGGVRPYGVSLLIAGWDE--GGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEGEMNGDTIEIGIV 213
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15 Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNY-KETSGQETIKLAIRALL-----EVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415 + Q +RL +PV +E +T+ + Q+YTQ GG RPFG++ LI G + G P LY+TDPSGT WKA + G + + ++E LE NY +E S E + LA+R + E+ +G VA T E +L EI A + Sbjct: 97 QAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIED--GSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDDELTAAGVDVATVASDTEE--FIELTNDEISAYI 236
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15 Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEIDAMV 415 E Q +RLT + +++E + + I ++Q YTQ GGVRPFG+S LI G D L++TDPSG +KA A G + E LE Y+ + + E ++LAI AL + E +N++V ++T ++ K++ EI ++ Sbjct: 96 EAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLI 234
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15 Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 65 IAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVMTRE 370 +A + Q+ TQSGGVRPFG+S LI G D + G SLYQ DPSG++ WKA A G+ S + + FLE + E ++ I +A+ L E VE G IE+A++ E Sbjct: 114 VAKIMQEATQSGGVRPFGVSLLIAGHDEFNGF-SLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDE 217
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15 Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVESG--GKNIEVAVMTRE-KGLKQLDEAEIDA 409 + Q +RL +P+ +E +T+ + Q+YTQ GG RPFG++ LI G + G P LY+TDPSGT WKA + G + +E LE N++ + + E I+LA+ A+ + G ++VA ++ E + +L EI++ Sbjct: 97 QSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVE--NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDEGTAPDGVDVATVSAETERFVELSNDEIES 234
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15 Identity = 51/142 (35.92%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 415 E Q +R++ ++P+ VE I++ I +Q YTQ GGVRP+G + LI G D P L++TDPSG +KA A G N++ E E +Y+E + I L + AL + E +EV V++ E K ++L E++ V Sbjct: 94 EAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYV 233
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15 Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2 Query: 29 EDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT-GRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVESGGKNIE 349 ++P+ VE + I +Q YTQ GG+RPFG+S L G+D + G LYQ+DPSG F+ WKA + G NS + L NYK + S +E ++LA++ L + ++ N E Sbjct: 103 QEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGF-QLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSE 210 The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bpback to top |