CF417839

Overview
NameCF417839
Unique NameCF417839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSG-QETIKLAIRALLEVV--ESGGKNIEVAVM-TREKGLKQLDEAEIDAMV 415
            E Q +++T  +P+ V+ +++ +  + Q YTQ+GGVRPFG S LI+G   Y G+  L++TDPSG    +KA A G   ++  +  E  YK+     E I LA+ A+ E    E+   N+E+AV+   E+   +L + E+   +
Sbjct:   96 EAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFG-SALIIG-GVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHETTANNVEIAVIKCGEEVYTKLSQEEVQTFI 235          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 40/111 (36.04%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES 331
            + Q +  + ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WKA A G N+ + +  L+ +YK + + ++ +KLA++AL + ++S
Sbjct:   93 QAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDDVTREDAVKLALKALSKTMDS 202          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 39/111 (35.14%), Postives = 69/111 (62.16%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES 331
            + Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +  WKA A G N+ + +  L+ +YK + + +E ++LA++ L + ++S
Sbjct:   93 QAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF-QLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDS 202          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 2
Query:   38 VTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKE-TSGQETIKLAIRALLEVVES--GGKNIEVAVM 361
            + V+D+ R    + Q+ TQSGGVRP+G+S LI G+D   G P LYQ DPSG++  WKA A G+N+ + + FLE  Y E    ++ + +A+  L E +E    G  IE+ ++
Sbjct:  109 ILVQDVAR----VMQEATQSGGVRPYGVSLLIAGWDE--GGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEGEMNGDTIEIGIV 213          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNY-KETSGQETIKLAIRALL-----EVVESGGKNIEVAVMTREKGLKQLDEAEIDAMV 415
            + Q +RL   +PV +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G + + ++E LE NY +E S  E + LA+R +      E+  +G     VA  T E    +L   EI A +
Sbjct:   97 QAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIED--GSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDDELTAAGVDVATVASDTEE--FIELTNDEISAYI 236          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES-GGKNIEVAVMT-REKGLKQLDEAEIDAMV 415
            E Q +RLT  + +++E + + I  ++Q YTQ GGVRPFG+S LI G D       L++TDPSG    +KA A G     + E LE  Y+ + +  E ++LAI AL +  E    +N++V ++T ++   K++   EI  ++
Sbjct:   96 EAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLI 234          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 2
Query:   65 IAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVES--GGKNIEVAVMTRE 370
            +A + Q+ TQSGGVRPFG+S LI G D + G  SLYQ DPSG++  WKA A G+ S + + FLE  +  E   ++ I +A+  L E VE    G  IE+A++  E
Sbjct:  114 VAKIMQEATQSGGVRPFGVSLLIAGHDEFNGF-SLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDE 217          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVESG--GKNIEVAVMTRE-KGLKQLDEAEIDA 409
            + Q +RL   +P+ +E +T+ +    Q+YTQ GG RPFG++ LI G +   G P LY+TDPSGT   WKA + G +    +E LE N++ + +  E I+LA+ A+    + G     ++VA ++ E +   +L   EI++
Sbjct:   97 QSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVE--NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDEGTAPDGVDVATVSAETERFVELSNDEIES 234          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 51/142 (35.92%), Postives = 79/142 (55.63%), Query Frame = 2
Query:    2 ECQSHRLTVEDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEXNYKETSGQE-TIKLAIRALLEVVES--GGKNIEVAVMTRE-KGLKQLDEAEIDAMV 415
            E Q +R++ ++P+ VE I++ I   +Q YTQ GGVRP+G + LI G D     P L++TDPSG    +KA A G   N++ E  E +Y+E    +  I L + AL +  E       +EV V++ E K  ++L   E++  V
Sbjct:   94 EAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVD--DNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYV 233          
BLAST of CF417839 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2
Query:   29 EDPVTVEDITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT-GRNSNSMREFLEXNYK-ETSGQETIKLAIRALLEVVESGGKNIE 349
            ++P+ VE +   I   +Q YTQ GG+RPFG+S L  G+D + G   LYQ+DPSG F+ WKA +  G NS   +  L  NYK + S +E ++LA++ L + ++    N E
Sbjct:  103 QEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGF-QLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSE 210          
The following BLAST results are available for this feature:
BLAST of CF417839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
PSMA_METS32.558e-1634.51Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA4_SPIOL2.558e-1636.04Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA4_ARATH5.699e-1635.14Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA2_NEUCR9.721e-1640.54Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSMA_HALWD1.270e-1538.19Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA_METJA2.166e-1535.46Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSA2_YEAST2.166e-1544.76Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSMA1_HALVO2.828e-1535.00Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_METAC4.825e-1535.92Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSA4_DICDI4.825e-1540.37Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-769 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417839 ID=CF417839; Name=CF417839; organism=Citrus sinensis; type=EST; length=644bp
AGAATGTCAGAGCCACAGGCTGACTGTTGAGGACCCAGTAACTGTTGAGG
ACATCACTCGTTACATTGCAGGTCTCCAGCAGAAGTACACACAAAGCGGT
GGTGTGAGACCATTTGGTCTTTCTACTCTGATTGTGGGCTTTGATCCATA
CACTGGCGTGCCATCACTATATCAGACAGATCCTTCTGGGACATTTTCTG
CTTGGAAAGCTAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTT
CTGGAGNAAAACTATAAGGAAACTTCCGGGCAAGAAACTATAAAGCTTGC
AATTCGGGCATTACTTGAGGTTGTTGAGAGTGGGGGCAAAAACATAGAAG
TTGCTGTGATGACAAGGGAGAAGGGTCTGAAGCAGCTTGATGAAGCTGAA
ATTGATGCCATGGTAGCCGAGATTGAAGCAAAGAAGGCCGCCGCTGAGGC
TGCAAAGAAGGGACCTCCCAAGGAAACATGAGTTTTTAGTTCTGGCTTCT
GTTTTTTCCATTGCCTGTTGTTTTTCACCTTTCAGAATTTTAGTATGCTT
TTTTTNGTGGNTAAGTTTTATATGCTTTTAGATTTGCATTCNAAAGATAT
ACCAGAGCCACCAGATTATTGCCAGCTTAAATTTTCTTATATGG
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