CF417844

Overview
NameCF417844
Unique NameCF417844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.892e-68
Identity = 126/150 (84.00%), Postives = 131/150 (87.33%), Query Frame = 2
Query:  209 PLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGSFDPLGLADDPEAFAEL 658
            P SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVL G+  G +           PI PGGSFDPLGLADDPEAFAEL
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 150          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.861e-61
Identity = 120/178 (67.42%), Postives = 138/178 (77.53%), Query Frame = 2
Query:  137 RKTGSKSV---SSGSPWYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGSFDPLGLADDPEAFAEL 658
            +KT +K+    SSG  +YGP+R K+LGP S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+L G   G +     A     P+ PG SFDPLGLADDP+ FAEL
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAEL 197          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.936e-59
Identity = 117/167 (70.06%), Postives = 130/167 (77.84%), Query Frame = 2
Query:  161 SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGSFDPLGLADDPEAFAEL 658
            S+G  WYGPDR K+LGP S   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVL G   G +     A     P+ PG SFDPLGLADDP+ FAEL
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAEL 200          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.141e-58
Identity = 121/198 (61.11%), Postives = 139/198 (70.20%), Query Frame = 2
Query:   74 GKAVNLAPSGN-ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGS-FDPLGLADDPEAFAEL 658
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+L G   G +            + PGG  FDPLGLADDP  FAEL
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAEL 212          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.652e-58
Identity = 125/196 (63.78%), Postives = 138/196 (70.41%), Query Frame = 2
Query:   71 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGSFDPLGLADDPEAFAEL 658
            + K   L P  + L      +M K  +KS  S S      RVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+L G+  G +           P+ P GSFD LGLA+D EAFAEL
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAEL 212          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.769e-58
Identity = 119/199 (59.80%), Postives = 137/199 (68.84%), Query Frame = 2
Query:   68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGS-FDPLGLADDPEAFAEL 658
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGP S + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVL G   G +            + PGG  FDPLGLADDP  FAEL
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAEL 209          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.178e-54
Identity = 110/169 (65.09%), Postives = 130/169 (76.92%), Query Frame = 2
Query:  176 WYGPDRVKYLGPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD------*PIVPGGSFDPLGLADDPEAFAEL 658
            +YGPDR K+LGP S  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVL     GL   +RA   S+        + PGG FDPLGLADDP+ FAEL
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLM----GLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAEL 197          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.844e-48
Identity = 106/175 (60.57%), Postives = 124/175 (70.86%), Query Frame = 2
Query:  140 KTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGSFDPLGLADDPEAFAEL 658
            K  SKS SS + +YGPD       L  + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVL G   G +     A     P+ PG +FDPLGLADDP+ FAEL
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAEL 218          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.221e-30
Identity = 69/94 (73.40%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  377 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD*PIVPGGSFDPLGLADDPEAFAEL 658
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G   G +           P+ PG +FDPLGLADDPEA AEL
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAEL 94          
BLAST of CF417844 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 83/180 (46.11%), Postives = 98/180 (54.44%), Query Frame = 2
Query:  149 SKSVSSGSP----WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGSR*GLQNCWRAAR*SD--*PIVPGGSFDPLGLADDPEAFAEL 658
            SK+VS  S     WYGPDR  +L  G L   E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A  V+L G+       +R     D    + PGG FDPLGLA DPE  A L
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVAEVVLLGGA-----EYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALL 221          
The following BLAST results are available for this feature:
BLAST of CF417844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB22_CUCSA3.892e-6884.00Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE7.861e-6167.42Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.936e-5970.06Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU2.141e-5861.11Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_MALDO3.652e-5863.78Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC4.769e-5859.80Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNTE4.178e-5465.09Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.844e-4860.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.221e-3073.40Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH3.334e-2746.11Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-774 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417844 ID=CF417844; Name=CF417844; organism=Citrus sinensis; type=EST; length=658bp
TTACACAGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACCA
TGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCA
GGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAG
CAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGT
ACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTC
CCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAAC
CTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGT
TGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTC
AAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGA
GGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCA
TCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAGGG
TTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACC
AGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTG
CTGAGCTC
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