CF417847

Overview
NameCF417847
Unique NameCF417847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  347 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE 586
            +T+S F   VL+S+ PVLV+F A WCGPC+++ P ++ +++E   ++ V+K++ D NP +  EY +  +PT++LFKNG++
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQ 84          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  326 ASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYID 646
            A + +  + +S +   V+ SE PVLV+F A WCGPCR++AP ++ LA+EY  ++   K++ D +P    +Y +  +PT++ FKNG+   +    GA+ K  L E ++
Sbjct:   65 AVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGER--KDSVIGAVPKATLSEKVE 169          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  329 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQ 583
            S  I  +T+  F + VLKS  PVLV++ A+WCGPC+++AP ++ +A EY  R+ V K++ D NP     Y + G+PTL+L +  +
Sbjct:    2 SDSIVHVTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSE 86          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 37/102 (36.27%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  341 TEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYID 646
            + +T+  F   VLKS+ PVLV+F A WC PCR++ P +E ++++   ++ V+K++ D NP++  +Y +  +PT++LFKNG++  +  + G   K  L E+I+
Sbjct:    3 SNVTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQ--KDTKVGLHQKNSLIEWIN 102          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 37/100 (37.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  344 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYI 643
            ++  S F + VL+S  PV+V+F A WCGPC+++APA++ +A E   ++ + K++ D NP+L  ++ V  +PTL++FK+G+    +   GA  K  L ++I
Sbjct:    4 KVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELA--ANMVGAAPKSRLADWI 101          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 38/105 (36.19%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  332 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYID 646
            S +  I +++F + V+ S+ P+L++F A WCGPC+++AP ++ LA E+  ++ +VK++ D N     ++ V  +PTL+L KNGQ V  + + GA+ K  L  +I+
Sbjct:    2 SEVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVV--ATQVGALPKTQLANFIN 104          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 34/83 (40.96%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  347 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPE 595
            +T++ F   + + ++PVLV+F A WCGPCR++AP +E  A+ + D++TV K++ D NP+   ++ +  +PTLILFK G+ V +
Sbjct:    5 LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQ 86          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 53/187 (28.34%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  113 SNSTLLFKQQPLVAPVRTVTVTHRQQNIITSAXXXXXXPSKNQLLFGSRTNLSLKSYNXTLPRLAIR---VRCGA---SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLL 655
            S+  +  + + ++A  +TV+++ RQ   +                 G RT +SL S +       +R   + C A   ++GI  + +S + + VLK++ PV+V+F A WCGPC+++ P V  LAQ+Y  ++   K++ D +P    +Y V  +PT+++F  G++  +    GA+ K  L   ID  L
Sbjct:    8 SSPPISLRSEMMIASSKTVSLSTRQMFSVG----------------GLRTRVSLSSVSKNSRASRLRRGGIICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEK--KDTIIGAVPKTTLATSIDKFL 176          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  347 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 589
            I E  F N VL+SE+ VLV+F A WCGPCR++ P +E +A+E+   L VV+++ D NP L   Y +  +PTL+LFK GQ V
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF--NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRV 82          
BLAST of CF417847 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  251 GSRTNLSLKSYNXTLPRLAI--------------------RVRCGASSGITEIT---ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLXLKEYIDTLLDS 661
            G R  LS  SY  + PR A                     R  C   + + E+    E  + N V+  E PVLVEF A WCGPCR++AP ++ LA++Y  ++   K++ D  P +   Y +  +PT+++FK+G++  +    GA+ K  L   ID  + S
Sbjct:   18 GIRERLSSGSYAPSRPRTAAPAVVSPSPYKSALVAARRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEK--KESVIGAVPKTTLCTIIDKYIGS 175          
The following BLAST results are available for this feature:
BLAST of CF417847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
THIO_RICFE9.046e-1641.25Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
TRXM_PEA1.181e-1535.51Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
THIO_THIRO1.543e-1541.18Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_RICBR1.543e-1536.27Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO1_CORNE1.543e-1537.00Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_HAEIN2.015e-1536.19Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO_ALIAC2.632e-1540.96Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]
TRXM_BRANA4.489e-1528.34Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
THIO_CYAME4.489e-1549.38Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
TRXM_WHEAT5.863e-1531.25Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-777 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417847 ID=CF417847; Name=CF417847; organism=Citrus sinensis; type=EST; length=720bp
GTTAGTCCTGCGGCTGCTCCGTTTTTGTATCACACAAAACTGAAAACAAT
TCAAAAAGAAAAGAAAATGCTCTAAAAATNTTTAAGCGCTTGCAAAATGG
ACATCCNTCTTCTCCAACTCCACTTTATTGTTCAAACAGCAACCACTGGT
TGCTCCTGTTCGTACAGTTACTGTGACCCACAGGCAACAGAACATCATCA
CCAGCGCTACAACAACAACAACAACGCCGTCAAAGAATCAGCTATTGTTC
GGGTCTCGAACGAACCTCTCACTCAAGTCTTATAATCNTACGCTTCCCAG
GTTGGCAATACGCGTACGCTGCGGTGCGAGCAGTGGCATAACGGAGATTA
CCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTT
GTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTTGGTTGCTCCCGC
CGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGACCGTCGTAAAGA
TTGATCATGACGCAAACCCACAACTAATAGAGGAATACAAAGTTTATGGA
TTGCCGACCTTGATTCTCTTCAAGAATGGACAGGAAGTTCCNGAAAGCAG
GAGGGAAGGTGCNATTACGAAGTTGANGCTTAAAGAGTATATTGATACTC
TTTTAGATTCNATCTCAGTGGCTTAGCCCTCTTTTGAACATGCTCAGCAA
ATTATGCTCATTCTTCCAAC
back to top