CF417854

Overview
NameCF417854
Unique NameCF417854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.563e-77
Identity = 152/216 (70.37%), Postives = 168/216 (77.78%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V+EIR AQR +GPATV+AIGTATP + V+Q+ YPDYYFRIT S+HM ELKEKFKRMCDKSMIKKRYMYL EEI ++ P+            + +VVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKR+MMYQQG F           L     GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSDHMNELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMEPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNTGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_CAMSI (Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.563e-77
Identity = 151/216 (69.91%), Postives = 167/216 (77.31%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR +GPATV+AIGTATP + V+Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKRYMYLTEEI ++ P             + +VVVEVPKLGKEAATKAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+D HLDSLVGQALF
Sbjct:    1 MVTVEEVRRAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDAHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.960e-77
Identity = 152/216 (70.37%), Postives = 167/216 (77.31%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV++IR AQR +GPATV+AIGTATP + V+Q+ YPDYYFRIT SEH  ELKEKFKRMCDKSMIKKRYMYLTEEI ++ P             + +VVVEVPKLGKEAATKAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVTVEDIRRAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHKAELKEKFKRMCDKSMIKKRYMYLTEEILKENPQVCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 7.783e-77
Identity = 150/216 (69.44%), Postives = 167/216 (77.31%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR +GPATVLAIGTATP + ++Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKRYMYLTEEI ++ P             + +VVVE+PKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAEGPATVLAIGTATPPNCLDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMYLTEEILKEHPNMCAYMAPSLDARQDMVVVEIPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.017e-76
Identity = 152/216 (70.37%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPATVLAIGTATPA+ V QADYPDYYFRIT SEHMTELKEKFKRMC+KSMI KRYM+LTEEI ++ P             + +VVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGL+PSVKR MMYQQG F           L  E       L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVAEIRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITNSEHMTELKEKFKRMCEKSMINKRYMHLTEEILKENPNVCAYMAPSLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLA-ENNAGSRVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSB_PEA (Chalcone synthase 1B OS=Pisum sativum GN=CHS-1B PE=3 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.328e-76
Identity = 152/216 (70.37%), Postives = 168/216 (77.78%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV EIR AQ+ +GPATVLAIGTATP + V+Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKRYM+LTEEI ++ P+            + +VVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVTVDEIRQAQKAEGPATVLAIGTATPPNCVDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPHVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_PUELO (Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.958e-76
Identity = 151/216 (69.91%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA P + V+Q+ YPDYYFRIT SEHMTELKEKF+RMCDKSMIKKRYMYLTEEI ++ P             + +VVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK LGLRP VKR+MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPPNCVDQSTYPDYYFRITNSEHMTELKEKFQRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKQLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.958e-76
Identity = 151/213 (70.89%), Postives = 165/213 (77.46%), Query Frame = 3 
Query:   15 VQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            +  IR AQR  GPAT+LAIGTATP++ V QADYPDYYFRITKSEHM +LKEKFKRMCDKSMI+KRYM+LTEE  ++ P+            + +VVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQG F           L    +GA   L+    ITAVTFRGP DTHLDSLVGQALF
Sbjct:    7 IAAIREAQRRQGPATILAIGTATPSNCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYMHLTEEYLKENPSLCEYMAPSLDARQDVVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPNDTHLDSLVGQALF 218
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.958e-76
Identity = 149/216 (68.98%), Postives = 167/216 (77.31%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR  GPAT++AIGTATP++ V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMI KRYM+LTEEI ++ P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDS+VGQALF
Sbjct:    1 MVTVEEVRRAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSMVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_PHAVU (Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS17 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.863e-76
Identity = 150/216 (69.44%), Postives = 167/216 (77.31%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTATP++ V+Q+ YPDYYFRIT SEHMT+LKEKF+RMCDKSMIKKRYM+L EEI ++ P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTATPSNCVDQSTYPDYYFRITNSEHMTDLKEKFQRMCDKSMIKKRYMHLNEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
The following BLAST results are available for this feature:
BLAST of CF417854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS6_SOYBN4.563e-7770.37Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS2_CAMSI4.563e-7769.91Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 P... [more]
CHS1_CAMSI5.960e-7770.37Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHS1_CASGL7.783e-7769.44Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHSY_VITVI1.017e-7670.37Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHSB_PEA1.328e-7670.37Chalcone synthase 1B OS=Pisum sativum GN=CHS-1B PE... [more]
CHSY_PUELO2.958e-7669.91Chalcone synthase OS=Pueraria lobata GN=CHS PE=2 S... [more]
CHSY_CALCH2.958e-7670.89Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS2_SOLLC2.958e-7668.98Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_PHAVU3.863e-7669.44Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-784 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417854 ID=CF417854; Name=CF417854; organism=Citrus sinensis; type=EST; length=653bp
TTGCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGNCGACGGG
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCAATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTGAAGGAAAATCCCAAC
ATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACCATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTCG
GCCTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGGCGCTCGCGTTCTTGTTGTCTGTTCGGANNATCACGGCGGTCACTT
TCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTG
TTT
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