CF417854

Overview
NameCF417854
Unique NameCF417854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.762e-38
Identity = 72/120 (60.00%), Postives = 86/120 (71.67%), Query Frame = 3
Query:  294 IVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            +++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  LLGL PSVKR+MMY QG F           L    + A   ++     TAVTFRGP++T +DSLVGQALF
Sbjct:   21 MMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSEN-TAVTFRGPSETDMDSLVGQALF 139          

HSP 2 Score: 42.743 bits (99), Expect = 4.762e-38
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 2
Query:  233 LKENPNMCAYMAPSLDARQD 292
            LKENPNMCAY APSLDAR+D
Sbjct:    1 LKENPNMCAYKAPSLDARED 20          
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.616e-37
Identity = 82/112 (73.21%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  318 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 111          
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/93 (66.67%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  375 ITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            ITHLI CTTS VDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 91          
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 44/156 (28.21%), Postives = 75/156 (48.08%), Query Frame = 3
Query:   27 RNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQG 494
            R + + +  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R+  L  +  +   +     L   T V       VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  LLGL   V+R  +   G
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRH--LVRDYTKPENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMG 2929          
The following BLAST results are available for this feature:
BLAST of CF417854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
THS2_ARAHY4.762e-3860.00Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA4.616e-3773.21Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA2.905e-2366.67Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
PKS1_DICDI4.351e-1128.21Probable polyketide synthase 1 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-784 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417854 ID=CF417854; Name=CF417854; organism=Citrus sinensis; type=EST; length=653bp
TTGCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGNCGACGGG
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCAATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTGAAGGAAAATCCCAAC
ATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACCATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTCG
GCCTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGGCGCTCGCGTTCTTGTTGTCTGTTCGGANNATCACGGCGGTCACTT
TCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTG
TTT
back to top