CF417854

Overview
NameCF417854
Unique NameCF417854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.045e-76
Identity = 148/216 (68.52%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR  GPAT++AIGT+TP + V+Q+ YPDYYFRIT SEH+ ELKEKFKRMC+KSMIKKRYMYLTEEI ++ P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGL+PSVKRFMMYQQG F           L    +GA   L+    ITAVTFRGP+D HLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAQGPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILKENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDAHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.045e-76
Identity = 150/217 (69.12%), Postives = 166/217 (76.50%), Query Frame = 3 
Query:    3 AMATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A  TV+E+R AQR  GPATVLAIGTATPA+ V+QADYPDYYFRITKSEHMTELKEKFKRMCDKS I+KRYM+LTEE   + P             + IVVVEVPKLGK AA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTK+LGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+++HLDS+VGQALF
Sbjct:    4 ATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNRGA-RVLVVCSEITAVTFRGPSESHLDSMVGQALF 219
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_VIGUN (Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.589e-76
Identity = 149/216 (68.98%), Postives = 168/216 (77.78%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTATP + V+Q+ YPDYYFRIT SEHMT+LKEKF+RMCDKSMIKKRYM++TEEI ++ P+            + IVVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFQRMCDKSMIKKRYMHVTEEILKENPSMCAYMAPSLDARQDIVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.124e-75
Identity = 148/216 (68.52%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR  GPAT++AIGT+TP + V+Q+ YPDYYFRIT SEH+ ELKEKFKRMC+KSMIKKRYMYLTEEI  + P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGL+PSVKRFMMYQQG F           L    +GA   L+    ITAVTFRGP+D HLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAQGPATIMAIGTSTPQNCVDQSTYPDYYFRITNSEHLVELKEKFKRMCEKSMIKKRYMYLTEEILTENPNICAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLQPSVKRFMMYQQGCFAGGTVIRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDAHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.468e-75
Identity = 148/216 (68.52%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR  GPAT++AIGTATP++ V+Q+ YPDYYFRIT SEHMTELKEKFKRMCDKSMI KRYM+LTEEI ++ P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTF GP+DTHLDS+VGQALF
Sbjct:    1 MVTVEEVRKAQRAKGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMINKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGA-RVLVVCSEITAVTFSGPSDTHLDSMVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 1.917e-75
Identity = 150/216 (69.44%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+EIR AQR +GPAT++AIGTATP++ V+Q+ YPDYYFRIT SEH TELKEKF+RMCDKSMIKKRYM+LTEEI ++ P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGLR SVKR MMYQQG F           L    +GA   L+    ITAVTFRGP DTHLDSLVGQALF
Sbjct:    1 MVTVEEIRRAQRAEGPATIMAIGTATPSNCVDQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMIKKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPNDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSA_PEA (Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.917e-75
Identity = 150/216 (69.44%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV EIR AQR +GPATV AIGTATP + V Q+ YPD+YFRIT S+H TELKEKF+RMCDKSMIKKRYM+LTEEI ++ P+            + +VVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVTVNEIRQAQRAEGPATVFAIGTATPQNCVEQSTYPDFYFRITNSQHKTELKEKFQRMCDKSMIKKRYMHLTEEILKENPSLCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.917e-75
Identity = 149/217 (68.66%), Postives = 165/217 (76.04%), Query Frame = 3 
Query:    3 AMATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A  TV+E+R AQR  GPATVLAIGTATPA+ V+QADYPDYYFRITKSEHMTELKEKFKRMCDKS I+KRYM+LTEE   + P             + IVVVEVPKLGK AA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTK+LGLRPSV R MMYQQG F           L    +GA   L+    ITAVTFRGP+++HLDS+VGQALF
Sbjct:    4 ATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGA-RVLVVCSEITAVTFRGPSESHLDSMVGQALF 219
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.917e-75
Identity = 149/217 (68.66%), Postives = 165/217 (76.04%), Query Frame = 3 
Query:    3 AMATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A  TV+E+R AQR  GPATVLAIGTATPA+ V+QADYPDYYFRITKSEHMTELKEKFKRMCDKS I+KRYM+LTEE   + P             + IVVVEVPKLGK AA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTK+LGLRPSV R MMYQQG F           L    +GA   L+    ITAVTFRGP+++HLDS+VGQALF
Sbjct:    4 ATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGA-RVLVVCSEITAVTFRGPSESHLDSMVGQALF 219
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS1_SORBI (Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.917e-75
Identity = 149/217 (68.66%), Postives = 165/217 (76.04%), Query Frame = 3 
Query:    3 AMATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A  TV+E+R AQR  GPATVLAIGTATPA+ V+QADYPDYYFRITKSEHMTELKEKFKRMCDKS I+KRYM+LTEE   + P             + IVVVEVPKLGK AA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTK+LGLRPSV R MMYQQG F           L    +GA   L+    ITAVTFRGP+++HLDS+VGQALF
Sbjct:    4 ATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGA-RVLVVCSEITAVTFRGPSESHLDSMVGQALF 219
The following BLAST results are available for this feature:
BLAST of CF417854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSE_IPONI5.045e-7668.52Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHS4_SORBI5.045e-7669.12Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHSY_VIGUN6.589e-7668.98Chalcone synthase OS=Vigna unguiculata GN=CHS PE=2... [more]
CHSE_IPOPU1.124e-7568.52Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHS2_SOLTU1.468e-7568.52Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHSJ_PETHY1.917e-7569.44Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHSA_PEA1.917e-7569.44Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE... [more]
CHS6_SORBI1.917e-7568.66Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS2_SORBI1.917e-7568.66Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHS1_SORBI1.917e-7568.66Chalcone synthase 1 OS=Sorghum bicolor GN=CHS1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-784 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417854 ID=CF417854; Name=CF417854; organism=Citrus sinensis; type=EST; length=653bp
TTGCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGNCGACGGG
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCAATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTGAAGGAAAATCCCAAC
ATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACCATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTCG
GCCTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGGCGCTCGCGTTCTTGTTGTCTGTTCGGANNATCACGGCGGTCACTT
TCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTG
TTT
back to top