CF417854

Overview
NameCF417854
Unique NameCF417854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.768e-74
Identity = 146/216 (67.59%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTATPA+ V Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+RYMYLTEEI ++ P+            + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTATPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.768e-74
Identity = 147/217 (67.74%), Postives = 165/217 (76.04%), Query Frame = 3 
Query:    3 AMATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A  TV+E+R AQR +GPATVLAIGTATPA+ V QADYPDYYF+ITKS+HM +LKEKFKRMCDKS I+KRYM+LTEEI +  P             + IVVVEVPKLGK AA KAIKEWGQP+SKITHL+FCTTSGVDMPGADYQLTK+LGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP ++HLDSLVGQALF
Sbjct:    3 ATMTVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPRSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGA-RVLVVCSEITAVTFRGPHESHLDSLVGQALF 218
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.768e-74
Identity = 145/216 (67.13%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR +GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEI ++ P+            + I VVEVPKLGKEAA  AIKEWGQPKSKITH++FCTTSG+DMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    IT VTFRGP++THLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLIVCSEITVVTFRGPSETHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.616e-74
Identity = 146/215 (67.91%), Postives = 165/215 (76.74%), Query Frame = 3 
Query:    9 ATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A ++EIRN QR  GPA +LAIGTATP++ V QADYPDYYFRIT SEHMT+LK KFKRMC+KSMI+KRYM++TEE  ++ P             + +VVVEVP+LGKEAA+KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQG F           L     GA   L+    ITAVTFRGP+D+HLDSLVGQALF
Sbjct:    7 AEIEEIRNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVCAYEAPSLDARQDLVVVEVPRLGKEAASKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGA-RVLVVCSEITAVTFRGPSDSHLDSLVGQALF 220
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.616e-74
Identity = 146/216 (67.59%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEI ++ P+            + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.616e-74
Identity = 146/216 (67.59%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEI ++ P+            + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_DIAMO (Chalcone synthase OS=Dianthus monspessulanus GN=CHS PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.722e-74
Identity = 144/216 (66.67%), Postives = 166/216 (76.85%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            MA+++EIR AQR DGPAT+LAIGTATP +++ QADYPDYYFR+TKSEHMTELKEKF+RMCDKSMIKKRYMYLTEEI ++ P             + +VV EVP+LGKEAA KAIKEWGQPKSKITH+I CTTSGVDMPGADYQLTKLLGLRPSV+RFM+YQQG F           L    +GA   L+    ITA+ FRGP +  LDS+VGQALF
Sbjct:    1 MASIEEIRQAQRADGPATILAIGTATPPNAIYQADYPDYYFRVTKSEHMTELKEKFRRMCDKSMIKKRYMYLTEEILKENPNLCEYMGSSLDTRQDMVVSEVPRLGKEAAVKAIKEWGQPKSKITHVIMCTTSGVDMPGADYQLTKLLGLRPSVRRFMLYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAICFRGPTEAALDSMVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.722e-74
Identity = 148/216 (68.52%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M  V+EIRNAQR  GPATVLAIGT+TP++ V+Q+ YPDYYFRIT SEH TELKEKFKRMC+KSMIKKRYM+LTEEI ++ P             + IVVVEVPKLGKEAA KAIKEWGQ KSKITHL+FCTTSGVDMPGADYQLTKLLGLR SVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+++HLDSLVGQALF
Sbjct:    1 MVNVEEIRNAQRAQGPATVLAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKKRYMHLTEEILQENPNICAYMAPSLDARQNIVVVEVPKLGKEAAQKAIKEWGQSKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSESHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSD_IPONI (Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.722e-74
Identity = 146/216 (67.59%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR +GPAT+LAIGTATPA+ V+Q+ YPDYYFRIT S+HMT+LK+KF+RMCDKSMI KRYM+LTEEI ++ P+            + IVVVEVPKLGKEAA  AIKEWGQPKSKITH+IFCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L  E   A   L+    IT VTFRGP +THLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPANCVDQSTYPDYYFRITNSDHMTDLKQKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIVVVEVPKLGKEAAQSAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLA-ENNKAARVLVVCSEITVVTFRGPNETHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.722e-74
Identity = 147/216 (68.06%), Postives = 163/216 (75.46%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA P + V+Q+ YPDYYFRIT S+HMTELKEKF+RMCDKSMIK RYMYL EEI ++ P             + +VVVEVPKLGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK LGLRP VKR+MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPPNRVDQSTYPDYYFRITNSDHMTELKEKFQRMCDKSMIKTRYMYLNEEILKENPNMCAYMAPSLDARQDMVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKQLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
The following BLAST results are available for this feature:
BLAST of CF417854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS6_PEA2.768e-7467.59Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
CHS2_SECCE2.768e-7467.74Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_IPOBA2.768e-7467.13Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_PETCR3.616e-7467.91Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHS4_TRISU3.616e-7467.59Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS3_TRISU3.616e-7467.59Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHSY_DIAMO4.722e-7466.67Chalcone synthase OS=Dianthus monspessulanus GN=CH... [more]
CHSY_CATRO4.722e-7468.52Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
CHSD_IPONI4.722e-7467.59Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV... [more]
CHS7_SOYBN4.722e-7468.06Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-784 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417854 ID=CF417854; Name=CF417854; organism=Citrus sinensis; type=EST; length=653bp
TTGCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGNCGACGGG
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCAATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTGAAGGAAAATCCCAAC
ATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACCATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTCG
GCCTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGGCGCTCGCGTTCTTGTTGTCTGTTCGGANNATCACGGCGGTCACTT
TCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTG
TTT
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