CF417854

Overview
NameCF417854
Unique NameCF417854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.052e-73
Identity = 145/216 (67.13%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEI ++ P+            + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.052e-73
Identity = 145/216 (67.13%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIRNAQR +GPAT LAIGTA P + V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEI ++ P+            + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRNAQRAEGPATTLAIGTANPTNCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEIMAPSLDAWQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.052e-73
Identity = 145/216 (67.13%), Postives = 165/216 (76.39%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEI ++ P+            + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.052e-73
Identity = 145/216 (67.13%), Postives = 163/216 (75.46%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR +GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEI ++ P+            + I VVEVPKLGKEAA  AIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKLLGL PSVKR MMYQQG F           L    +GA   L+    IT VTFRGP++THLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLSPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLIVCSEITVVTFRGPSETHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.374e-73
Identity = 146/214 (68.22%), Postives = 163/214 (76.17%), Query Frame = 3 
Query:   12 TVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            ++ EIR AQR DGPA +LAIGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M++TEE  ++ P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    8 SLDEIRKAQRADGPAGILAIGTANPANYVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHVTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 220
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.374e-73
Identity = 146/215 (67.91%), Postives = 163/215 (75.81%), Query Frame = 3 
Query:    9 ATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            +++ EIR AQR DGPA +LAIGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M+LTEE  +  P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    7 SSLDEIRKAQRADGPAGILAIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKDNPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 220
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.374e-73
Identity = 145/216 (67.13%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M +V EIR AQR +GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEI ++ P             + +VVVEVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQG F           L    +GA   L+    +TAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEVTAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.374e-73
Identity = 146/215 (67.91%), Postives = 163/215 (75.81%), Query Frame = 3 
Query:    9 ATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            +++ EIR AQR DGPA +LAIGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M+LTEE  +  P             + IVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    7 SSLDEIRKAQRADGPAGILAIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKDNPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 220
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.794e-73
Identity = 143/216 (66.20%), Postives = 164/216 (75.93%), Query Frame = 3 
Query:    6 MATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            M TV+E+R AQR +GPAT+LAIGTATP + V+Q+ YPD+YFR+T SEH  ELK KF+RMCD S IKKRYM+LTEEI ++ P             + +VVVE+PKLGKEAAT+AIKEWGQPKSKITHL+FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP+DTHLDSLVGQALF
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNICAYMAPSLDARQDMVVVEIPKLGKEAATRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPSDTHLDSLVGQALF 215
[Close]
BLAST of CF417854 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.794e-73
Identity = 145/217 (66.82%), Postives = 166/217 (76.50%), Query Frame = 3 
Query:    3 AMATVQEIRNAQRXDGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEI*RKIPTCALTWLHHSTHVKTIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGMFRRRHCSSPR*RLG*EQQGALAFLLSVRXITAVTFRGPADTHLDSLVGQALF 653
            A+  V+ IR AQR +GPAT+LAIGTATPA+ V QADYPDYYFR+T+SEHM +LKEKF+RMCDKSMI+KRYM++TEE  ++ P+            + +VVVEVPKLGKEAATKAIKEWG PKSKITHL+FCTTSGVDMPGADYQLTKLLGLRPSVKR MMYQQG F           L    +GA   L+    ITAVTFRGP + HLDSLVGQALF
Sbjct:    6 AVIDVETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYMHITEEFLKENPSMCKFMAPSLDARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGA-RVLVVCSEITAVTFRGPNEGHLDSLVGQALF 221
The following BLAST results are available for this feature:
BLAST of CF417854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS8_MEDSA1.052e-7367.13Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS5_MEDSA1.052e-7367.13Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
CHS4_MEDSA1.052e-7367.13Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS2_IPOBA1.052e-7367.13Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_CARAN1.374e-7368.22Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS3_SINAL1.374e-7367.91Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHS2_MEDSA1.374e-7367.13Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHS1_SINAL1.374e-7367.91Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]
CHSY_HYDMC1.794e-7366.20Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS3_GERHY1.794e-7366.82Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-784 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417854 ID=CF417854; Name=CF417854; organism=Citrus sinensis; type=EST; length=653bp
TTGCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGNCGACGGG
CCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAA
CCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATA
TGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCAATGATT
AAGAAGCGTTACATGTACTTAACGGAAGAGATTTGAAGGAAAATCCCAAC
ATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACCATTGTGG
TGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAA
GAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCAC
CTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTCG
GCCTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGGCGCTCGCGTTCTTGTTGTCTGTTCGGANNATCACGGCGGTCACTT
TCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTG
TTT
back to top