CF417862

Overview
NameCF417862
Unique NameCF417862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.057e-31
Identity = 69/78 (88.46%), Postives = 70/78 (89.74%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            FTK  SRLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 68/78 (87.18%), Postives = 69/78 (88.46%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 68/78 (87.18%), Postives = 69/78 (88.46%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_BOVIN (ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 68/78 (87.18%), Postives = 69/78 (88.46%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F KLF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.013e-30
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            SF+KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    4 SFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.629e-30
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 3
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            +F+KLF R++ KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDK+    R YF
Sbjct:    4 AFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.485e-30
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 3
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            +F KLFSR F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE+KNI+FTVWDVGGQDK+    R YF
Sbjct:    4 AFGKLFSRFFGKKDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.858e-30
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.858e-30
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.858e-30
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  LF  LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
The following BLAST results are available for this feature:
BLAST of CF417862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ARF1_CHLRE4.057e-3188.46ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF2_RAT1.542e-3087.18ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE1.542e-3087.18ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]
ARF2_BOVIN1.542e-3087.18ADP-ribosylation factor 2 OS=Bos taurus GN=ARF2 PE... [more]
ARF_ASHGO2.013e-3083.54ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF_AJECA2.629e-3083.54ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF1_DICDI4.485e-3083.54ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
ARF1_XENLA5.858e-3085.90ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT5.858e-3085.90ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE5.858e-3085.90ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-792 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417862 ID=CF417862; Name=CF417862; organism=Citrus sinensis; type=EST; length=680bp
TGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGA
ATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAA
GCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATG
TAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGG
GGTCAAGACAAGGTATGTAGATTTTATTTTAATATATTCAGCCTGATCTA
GCTTTAGGATGTTTTTATGTTGATGATACTGTTGTTTCCTCTCATCGGTC
ACCAGTGAGTTAATGCATAGGGACAGGTCAGCTCTTTTAAATTATAAATT
CATTTTTTGGCCGTTAGCGTTGCTACCAGCGTATGTACATATGAATGTGT
CTTTTGCCTTGTAACAATGTGTCTCTTGAAGGTTGAGGGTGGTCGACCAT
AGAGTGAAGCATATTGTTTGCCTTTTGTGGTTTTCAAAAGTAAAGCCTTT
TTGTGCATTTGAAGTCTTAGCCTAGTTGTGCAAGGGAGCTGCCCATGGGC
TGGGGCAGGTTGCTGGGTTTCAATTATTAAGTCATGGCAAAGACAGGATT
GAAAGGTGTGATCCTGTTTCCTATATATTGNTCGAGCTTCTGACACATAT
AATTTTGGTCTCCCAGATCCGACCTTTGTG
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