CF417862

Overview
NameCF417862
Unique NameCF417862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   36 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKVCRFYFNIF 239
            ++EMRIL++GLD AGKTTIL +     I T  PT+GFN++T+E+   +  +WDVGGQ  +  ++ N F
Sbjct:   14 EREMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYF 81          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 3
Query:    9 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKVCRFYFNIF 239
            T L  +   ++E+R+L++GLD AGKTTIL  L   ++    PT GF + T+E + + FT+WD+GGQ  +  F+ N F
Sbjct:    5 TILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYF 81          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   24 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 209
            R+F  +E ++++VGLD AGKTTILY+    E+V T  TIG NVE +  +   F +WD+GGQ+
Sbjct:   10 RIFGSQEHKVIIVGLDNAGKTTILYQFLTNEVVHTCSTIGSNVEEIVLRKTHFLMWDLGGQE 71          
The following BLAST results are available for this feature:
BLAST of CF417862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ARL2_DROME1.603e-1147.06ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL_SCHPO4.663e-1141.56ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL5C_MOUSE6.090e-1148.39ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-792 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417862 ID=CF417862; Name=CF417862; organism=Citrus sinensis; type=EST; length=680bp
TGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGA
ATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAA
GCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATG
TAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGG
GGTCAAGACAAGGTATGTAGATTTTATTTTAATATATTCAGCCTGATCTA
GCTTTAGGATGTTTTTATGTTGATGATACTGTTGTTTCCTCTCATCGGTC
ACCAGTGAGTTAATGCATAGGGACAGGTCAGCTCTTTTAAATTATAAATT
CATTTTTTGGCCGTTAGCGTTGCTACCAGCGTATGTACATATGAATGTGT
CTTTTGCCTTGTAACAATGTGTCTCTTGAAGGTTGAGGGTGGTCGACCAT
AGAGTGAAGCATATTGTTTGCCTTTTGTGGTTTTCAAAAGTAAAGCCTTT
TTGTGCATTTGAAGTCTTAGCCTAGTTGTGCAAGGGAGCTGCCCATGGGC
TGGGGCAGGTTGCTGGGTTTCAATTATTAAGTCATGGCAAAGACAGGATT
GAAAGGTGTGATCCTGTTTCCTATATATTGNTCGAGCTTCTGACACATAT
AATTTTGGTCTCCCAGATCCGACCTTTGTG
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