CF417862

Overview
NameCF417862
Unique NameCF417862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 66/78 (84.62%), Postives = 68/78 (87.18%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  LF  LF K+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.797e-29
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 3
Query:   15 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            +FSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDK+    R YF
Sbjct:    8 IFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 3
Query:    3 SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            + + L +RLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDK+    R YF
Sbjct:    4 TISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 3
Query:    6 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV---CRFYF 230
            F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK+    R YF
Sbjct:    5 FGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 82          
BLAST of CF417862 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 3
Query:    9 TKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKV 215
            +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD++
Sbjct:    6 SKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74          
The following BLAST results are available for this feature:
BLAST of CF417862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ARF12_CAEEL2.226e-2984.62ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF5_CHICK3.797e-2985.33ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF2_DROME8.458e-2981.01ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
ARF3_TAKRU1.884e-2883.33ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.884e-2883.33ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.884e-2883.33ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.884e-2883.33ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.884e-2883.33ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.884e-2883.33ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF2_YEAST1.884e-2884.06ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-792 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417862 ID=CF417862; Name=CF417862; organism=Citrus sinensis; type=EST; length=680bp
TGTCTTTCACCAAGCTTTTCAGCAGGCTTTTTGCTAAGAAAGAGATGAGA
ATTCTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAA
GCTTAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATG
TAGAGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGG
GGTCAAGACAAGGTATGTAGATTTTATTTTAATATATTCAGCCTGATCTA
GCTTTAGGATGTTTTTATGTTGATGATACTGTTGTTTCCTCTCATCGGTC
ACCAGTGAGTTAATGCATAGGGACAGGTCAGCTCTTTTAAATTATAAATT
CATTTTTTGGCCGTTAGCGTTGCTACCAGCGTATGTACATATGAATGTGT
CTTTTGCCTTGTAACAATGTGTCTCTTGAAGGTTGAGGGTGGTCGACCAT
AGAGTGAAGCATATTGTTTGCCTTTTGTGGTTTTCAAAAGTAAAGCCTTT
TTGTGCATTTGAAGTCTTAGCCTAGTTGTGCAAGGGAGCTGCCCATGGGC
TGGGGCAGGTTGCTGGGTTTCAATTATTAAGTCATGGCAAAGACAGGATT
GAAAGGTGTGATCCTGTTTCCTATATATTGNTCGAGCTTCTGACACATAT
AATTTTGGTCTCCCAGATCCGACCTTTGTG
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