CF417867

Overview
NameCF417867
Unique NameCF417867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.749e-25
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 73/167 (43.71%), Postives = 91/167 (54.49%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I   + + + FVE  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   89 ETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHVADPVANN 253          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 73/168 (43.45%), Postives = 91/168 (54.17%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R     P    E   YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:   90 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 73/168 (43.45%), Postives = 91/168 (54.17%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R     P    E   YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:   90 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.689e-25
Identity = 75/170 (44.12%), Postives = 92/170 (54.12%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.689e-25
Identity = 73/167 (43.71%), Postives = 91/167 (54.49%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + + FVE  R       +   K YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL+ H+ DP  NN
Sbjct:   89 ETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLSDHINDPVANN 253          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.124e-25
Identity = 75/170 (44.12%), Postives = 92/170 (54.12%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB22_TOBAC2.749e-2544.12Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC3.590e-2544.12Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB26_PETSP3.590e-2543.71Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB24_TOBAC3.590e-2544.12Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_ARATH3.590e-2543.45Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC3.590e-2544.12Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_ARATH3.590e-2543.45Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2A_SPIOL4.689e-2544.12Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC4.689e-2543.71Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2G_SOLLC6.124e-2544.12Chlorophyll a-b binding protein 3C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-797 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bp
CTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGG
GCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGG
CAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCA
CATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTG
ATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAA
AGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCT
TCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAA
AATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATC
AGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTG
ATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTG
CCTTGAAGAACTGCATTGTTANATTATCCAGTCCACTGTAAAATTCCCTG
TTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAAGAT
TAGAAAGTAATTGTCCTC
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