CF417867
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.486e-23 Identity = 72/170 (42.35%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH WAML G + PE L G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 30 ETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 194
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23 Identity = 71/170 (41.76%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP + ++ I + + + VE R DP YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLA P +NN Sbjct: 87 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAGPVNNN 251
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.277e-22 Identity = 67/173 (38.73%), Postives = 95/173 (54.91%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 470 ENL + ++EL++ RWAML V G+L+PE + +W A G+ Y + + T+ VIEF+ +VE +R S+ +DP K+ YPGG F+PL F+ E K KEI NGRLA+LAF+GF +Q + G GP +NL H++DPWHN I Sbjct: 86 ENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AGKEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISDPWHNTI 245
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.668e-22 Identity = 70/164 (42.68%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 21 KESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK------DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 ++ E+IHCRW ML G + PE G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + DP+ F E +VKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 96 RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGG-LDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22 Identity = 69/169 (40.83%), Postives = 91/169 (53.85%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ---AQEW-----AAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E +RY+E ELIH R +L G++ PE L + ++ A W A G YLGNP + + L ++ + + VE R + P + YPG AFDPLG + DP F E KVKEIKNGRLA+ A +GF V Q+ G GP+ENL HLA+P NN Sbjct: 96 ETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIVTGKGPIENLTDHLANPAENN 262
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22 Identity = 70/170 (41.18%), Postives = 89/170 (52.35%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLG+P + ++ I + + + +E R DP YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GP+ENLA HLADP +NN Sbjct: 102 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22 Identity = 70/170 (41.18%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G +W +A GG YLGN + ++ I + + + VE R DP YPGG+FDPL + DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLA+P +NN Sbjct: 69 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGG-LDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAEPVNNN 233
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.715e-22 Identity = 71/170 (41.76%), Postives = 90/170 (52.94%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG ++ P+ F E KVKE+KNGRLA+ + GF V + G GPLENLA HLADP +NN Sbjct: 52 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFV-PAIVTGKGPLENLADHLADPVNNN 216
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22 Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W + GG YLGNP V ++ I + + + VE R DP YPGG+FDPLG + D + F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 88 ETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGG-LQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 252
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 8.277e-22 Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH RWAML G + PE L G W +A GG YLG+P + ++ I + + + +E R DP YPGG FDPLG + DP F + KVKEIKNGRLA+ + GF V Q+ G GP+ENLA HLADP +NN Sbjct: 102 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI---YPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266 The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bpback to top |