CF417867

Overview
NameCF417867
Unique NameCF417867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 69/168 (41.07%), Postives = 87/168 (51.79%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E  +RY+E ELIH RWAML   G   PE L       G   W +A       GG   YLGNP  V    +     ++ + +  +E  R +   P  +     YPG +FDPLG + DP  F E KVKEIKNGRLA  +  GF V Q+   G GP++NL  HLA+P  NN
Sbjct:   77 ETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR-VNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 69/170 (40.59%), Postives = 87/170 (51.18%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWAML   G + PE L       G   W +A       GG   Y GNP  +   ++  I   + + +  +E  R          DP     PGGAFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 67/182 (36.81%), Postives = 91/182 (50.00%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 491
            E+L   +++EL+HCRWAML   GI +PE L     +    W     G+  Y  +        T+ ++E + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H  I     P+
Sbjct:   98 ESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSW--YTAGEQEYFTDTT------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 68/170 (40.00%), Postives = 89/170 (52.35%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IHCRWA+    G + PE L       G G W +A       GG  ++ GNP  V   ++  I   + + +  VE             DP    Y GG+FDPLG   DP++F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HL DP +NN
Sbjct:   88 ETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 68/182 (37.36%), Postives = 90/182 (49.45%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 491
            E+L+   ++EL+H RWAML   GI +PE L     +    W     G+  Y  +        T+ VIE + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H  I     P+
Sbjct:   98 ESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTA--GEQEYFTDTT------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 71/168 (42.26%), Postives = 85/168 (50.60%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   R +  E+IH RWAML   G + PE L     V+ +E  W          G   YLGNP  V   ++  +L  + L +  VE  R    D        YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL DP  NN
Sbjct:   90 EAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 64/156 (41.03%), Postives = 91/156 (58.33%), Query Frame = 3
Query:    9 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 473
            L R++E ELIH RWAMLA  G LV EA    +WV+A     V    A+Y G  +P+ ++  ++ IE + +   E  R+ E +PEK+ YPGG FDPL   S+D ++    K  EIK+ RLA+++F G+ V Q+   G G L +LA   AD  +N  G
Sbjct:  130 LARFRECELIHGRWAMLACLGALVAEATTGVSWVEA---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGV-QALSTGEGALGSLA-KFADGLNNGKG 279          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 65/171 (38.01%), Postives = 87/171 (50.88%), Query Frame = 3
Query:   30 ELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR----------------SMEK------DPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 470
            E+I+ R+AML   G + PE LG    + Q    A    G     G    W    T+ V+E   + F EH+R                 +EK      DP    YPGG  F+PLGF KD +  +E K+KEIKNGRLA+LA +G+ + Q+   G GP +NL  HLADP +NN+
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNNV 266          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 63/168 (37.50%), Postives = 85/168 (50.60%), Query Frame = 3
Query:   30 ELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 470
            E+I+ R+AML   G + PE LG +G   Q    A    G     G    W    T+ V+E   + F EH+R        SM K                 YPGG F +PLGF KD +  +E K+KE+KNGRLA+LA +G+ + Q    G GP +NL  H+ADP +NN+
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNNV 268          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 67/170 (39.41%), Postives = 83/170 (48.82%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +  E+IH RWAML   G + PE L    WV+      V           G   YLGNP  V   ++  +L  + + +  VE  R             YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL +P  NN
Sbjct:   87 EAFAKNRALEVIHGRWAMLGALGCIFPEVLE--KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253          
The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB2_CHLRE1.081e-2141.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH1.844e-2140.59Chlorophyll a-b binding protein type I, chloroplas... [more]
CB12_SOLLC5.365e-2136.81Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB48_MAIZE7.007e-2140.00Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB12_PETHY7.747e-2037.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU1.321e-1942.26Chlorophyll a-b binding protein of LHCII type III,... [more]
CB29_CHLRE2.944e-1941.03Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB13_SOLLC2.944e-1938.01Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.908e-1837.50Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_SOLLC9.470e-1839.41Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-797 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bp
CTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGG
GCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGG
CAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCA
CATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTG
ATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAA
AGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCT
TCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAA
AATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATC
AGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTG
ATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTG
CCTTGAAGAACTGCATTGTTANATTATCCAGTCCACTGTAAAATTCCCTG
TTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAAGAT
TAGAAAGTAATTGTCCTC
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