CF417867

Overview
NameCF417867
Unique NameCF417867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  153 YLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            YLGNP  V   ++  I   + + +  VE  R     P    E   YPGG+FDPL    DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:    3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 112          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 57/142 (40.14%), Postives = 73/142 (51.41%), Query Frame = 3
Query:   72 ILVPEALGLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            +LV   +  G   W +A       GG   YLGNP  +   ++  I   + + +  +E  R          DP    YPG AFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:    2 LLVKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 138          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 59/161 (36.65%), Postives = 75/161 (46.58%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 485
            +  ER + +E+ H R AMLAV G LVP+ LG G W +A + A +                L  + +       F   +   E       YPG  FDPL  + D       K  EIKNGRLAL A +GF VQ+    G+ PL NLA HL  P   NI D I+
Sbjct:   35 DTFERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQPLQRNIADSIM 172          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  180 TLPTILVIEFLSIAFVEHQRSMEKDPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            +L  IL  + L +  VE  R+    P +      + YPGG FDPLG + DP  F E KVKEIKNGRLA+   +GF   Q+   G GP+EN   HL DP  +N
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF-YAQAIVTGEGPVENWLYHLQDPSAHN 110          
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 62/167 (37.13%), Postives = 82/167 (49.10%), Query Frame = 3
Query:    3 ENLERYKESELIHCRWAMLAVPGILVPEAL-----GLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467
            E   + +E E+IH R AM A  G + PE L     G G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R       +     YPG +FD LG ++D + F E KVKE+KNGRLA+ +  GF V Q+       LENLA HL    +NN
Sbjct:   93 ETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFV-QAIVSRKDRLENLADHLGWTVNNN 256          
The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB2D_SOLLC1.615e-1765.15Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.615e-1765.15Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.615e-1765.15Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC2.755e-1763.64Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.755e-1763.64Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA2.755e-1748.65Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB22_PINSY9.800e-1540.14Chlorophyll a-b binding protein type 2 member 2 (F... [more]
LH18_EUGGR6.352e-1436.65Light-harvesting complex I LH38 proteins (Fragment... [more]
CB21_EUGGR1.084e-1344.12Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_MALDO4.117e-1337.13Chlorophyll a-b binding protein AB10, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-797 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bp
CTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGG
GCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGG
CAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCA
CATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTG
ATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAA
AGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCT
TCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAA
AATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATC
AGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTG
ATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTG
CCTTGAAGAACTGCATTGTTANATTATCCAGTCCACTGTAAAATTCCCTG
TTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAAGAT
TAGAAAGTAATTGTCCTC
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