CF417867
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17 Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17 Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA H+ADP +NN Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17 Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 3 Query: 270 YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA H+ADP +NN Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17 Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 3 Query: 153 YLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 YLGNP V ++ I + + + VE R P E YPGG+FDPL DP+ F E KVKEIKNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 3 YLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 112
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15 Identity = 57/142 (40.14%), Postives = 73/142 (51.41%), Query Frame = 3 Query: 72 ILVPEALGLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 +LV + G W +A GG YLGNP + ++ I + + + +E R DP YPG AFDPLG + DP+ E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HLADP NN Sbjct: 2 LLVKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 138
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 59/161 (36.65%), Postives = 75/161 (46.58%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVII 485 + ER + +E+ H R AMLAV G LVP+ LG G W +A + A + L + + F + E YPG FDPL + D K EIKNGRLAL A +GF VQ+ G+ PL NLA HL P NI D I+ Sbjct: 35 DTFERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQNAGI---------------GLKEVAIFTAAYGVFEVARGVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS-PLANLAEHLQQPLQRNIADSIM 172
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13 Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 3 Query: 180 TLPTILVIEFLSIAFVEHQRSMEKDPEK------KKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 +L IL + L + VE R+ P + + YPGG FDPLG + DP F E KVKEIKNGRLA+ +GF Q+ G GP+EN HL DP +N Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGF-YAQAIVTGEGPVENWLYHLQDPSAHN 110
BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 62/167 (37.13%), Postives = 82/167 (49.10%), Query Frame = 3 Query: 3 ENLERYKESELIHCRWAMLAVPGILVPEAL-----GLGN--WVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEK---DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 467 E + +E E+IH R AM A G + PE L G G W +A GG YLGNP V ++ I + + + VE R + YPG +FD LG ++D + F E KVKE+KNGRLA+ + GF V Q+ LENLA HL +NN Sbjct: 93 ETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFV-QAIVSRKDRLENLADHLGWTVNNN 256 The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bpback to top |