CF417867

Overview
NameCF417867
Unique NameCF417867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF417867 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 57/157 (36.31%), Postives = 74/157 (47.13%), Query Frame = 3 
Query:   15 RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR-----SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 470
            R + SE+ H R +MLA+ G +VPE LG G W +              +GN V    L  IL+      A  E+ R     + +K    + YPG  FDPL  + D      Y  +EIKNGRLA+   +G   Q  A  G  PL NLA H A+P   NI
Sbjct:  196 RMRVSEVFHARLSMLAIVGSIVPELLGKGAWFE--------------VGNSVDGIKLGFILM---AIAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTD------YTKREIKNGRLAMTGLLGLTFQYLA-TGESPLANLAAHFANPVGANI 326
The following BLAST results are available for this feature:
BLAST of CF417867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
LH15_EUGGR7.765e-1236.31Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-797 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417867 ID=CF417867; Name=CF417867; organism=Citrus sinensis; type=EST; length=618bp
CTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGG
GCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGG
CAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCA
CATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTG
ATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAA
AGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCT
TCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAA
AATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATC
AGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTG
ATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTG
CCTTGAAGAACTGCATTGTTANATTATCCAGTCCACTGTAAAATTCCCTG
TTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAAGAT
TAGAAAGTAATTGTCCTC
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