CF417871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.372e-110 Identity = 127/141 (90.07%), Postives = 136/141 (96.45%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCG+QIGAKFWEVI DEHGID TG Y+GDSDLQLER+NVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV HSLGG Sbjct: 1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGDSDLQLERVNVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEQCDCLQGFQVTHSLGG 141 HSP 2 Score: 143.665 bits (361), Expect = 2.372e-110 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M+TFSV PSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 3.095e-110 Identity = 130/141 (92.20%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 139.813 bits (351), Expect = 3.095e-110 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKVREEYPDRIMATFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 5.269e-110 Identity = 120/132 (90.91%), Postives = 129/132 (97.73%), Query Frame = 2 Query: 59 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 GQCGNQIG+KFWEV+CDEHGID TG+Y G+SDLQLER+NVYYNEAS GR+VPRA+LMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG Sbjct: 1 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 132 HSP 2 Score: 152.91 bits (385), Expect = 5.269e-110 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT Sbjct: 132 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 205
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 2.599e-109 Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+H+QGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINV+YNEA+GGR+VPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDSDLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 141.739 bits (356), Expect = 2.599e-109 Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE V+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 3.392e-109 Identity = 125/141 (88.65%), Postives = 136/141 (96.45%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MRE++HIQGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ HSLGG Sbjct: 1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGG 141 HSP 2 Score: 139.428 bits (350), Expect = 3.392e-109 Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENADE M LDNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 4.425e-109 Identity = 120/141 (85.11%), Postives = 130/141 (92.20%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREILH+Q GQCGNQIG KFWEV+ DEHGID G Y G S +QLER+NVYYNEASGGRYVPRAVLMDLEPGTMDS+R+GP GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENC CLQGFQ+CHSLGG Sbjct: 1 MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVGTSRVQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCACLQGFQICHSLGG 141 HSP 2 Score: 150.214 bits (378), Expect = 4.425e-109 Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKI+EEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEN DECMVLDNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 5.773e-109 Identity = 127/141 (90.07%), Postives = 134/141 (95.04%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+H+QGGQCGNQIGAKFWEVI DEHGI TG Y GDSDLQLERI+V+YNEA+GGRYVPRAVLMDLEPGTMDSVRSGPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV HSLGG Sbjct: 1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDSDLQLERISVFYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQVTHSLGG 141 HSP 2 Score: 141.739 bits (356), Expect = 5.773e-109 Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE V+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 5.774e-109 Identity = 127/141 (90.07%), Postives = 132/141 (93.62%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREILH+QGGQCGNQIGAKFWEV+C EHGID TG Y GDS+ QLER+NVYYNEAS GRYVPRAVLMDLEPGTMDSVRSG +GQIFRPDNFVFGQSGAGNNWAKG YTEGAELIDSVL VVRKEAENCDCLQGFQVCHSLGG Sbjct: 1 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYRGDSETQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGHYGQIFRPDNFVFGQSGAGNNWAKGXYTEGAELIDSVLAVVRKEAENCDCLQGFQVCHSLGG 141 HSP 2 Score: 142.895 bits (359), Expect = 5.774e-109 Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDRMM+TFSVF SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI RT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMMTFSVFASPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIXLRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 1.283e-108 Identity = 125/141 (88.65%), Postives = 134/141 (95.04%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQ GQCGNQIGAKFWEVI DEHGID +G Y GDSDLQLERI+V+YNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ HSLGG Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDQSGTYHGDSDLQLERIDVFYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGG 141 HSP 2 Score: 142.124 bits (357), Expect = 1.283e-108 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTGSGMGTLLISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE V+DNEALYDICFRT Sbjct: 141 GGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRT 214
BLAST of CF417871 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 2.849e-108 Identity = 123/141 (87.23%), Postives = 136/141 (96.45%), Query Frame = 2 Query: 32 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGG 454 MREI+HIQGGQCGNQIGAKFWEV+ DEHG+D TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDC+QGFQ+ HS+GG Sbjct: 1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCMQGFQLTHSMGG 141 HSP 2 Score: 139.813 bits (351), Expect = 2.849e-108 Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 453 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRT 674 GGTG+GMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENAD+C LDNEALYDICFRT Sbjct: 141 GGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRT 214 The following BLAST results are available for this feature:
BLAST of CF417871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 421
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417871 ID=CF417871; Name=CF417871; organism=Citrus sinensis; type=EST; length=676bpback to top |