CF417886

Overview
NameCF417886
Unique NameCF417886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 8.715e-63
Identity = 102/148 (68.92%), Postives = 123/148 (83.11%), Query Frame = 2
Query:    2 KSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 445
            +S HM E+K KF RMC KS IKKR M++ E+IL+ +P++ +Y   SLD RQD++V EVPKLGK AA  AI EWGQPKS ITHLIFCT+SG+DMPGAD+ L KL+GLRP+V R M+YQQGCFAG TVLR+AKDLAENNKG+R+LVVCSE
Sbjct:   52 QSNHMAEVKAKFTRMCAKSGIKKRRMHINEDILEAHPSIRSYHDNSLDVRQDMLVEEVPKLGKVAADNAIAEWGQPKSNITHLIFCTSSGIDMPGADWALMKLLGLRPTVNRVMVYQQGCFAGCTVLRIAKDLAENNKGSRILVVCSE 199          

HSP 2 Score: 49.2914 bits (116), Expect = 8.715e-63
Identity = 29/86 (33.72%), Postives = 42/86 (48.84%), Query Frame = 3
Query:  429 LLSVRRITAVTFRGPADTHLDSLVGQALFGDGAAAVDRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXAIDGHLREVGLTFHLLKDV 686
            L+    +T ++FRGP + H ++LVGQALFGDGAAA+  G                            A+ G+++E GL  HL K +
Sbjct:  194 LVVCSELTLISFRGPTEDHPENLVGQALFGDGAAALIVGA-DPIPHAENASFEIHWARSSVVPDSDDAVTGNIKENGLVLHLSKTI 278          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.483e-62
Identity = 109/156 (69.87%), Postives = 129/156 (82.69%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEDHGSHFPRP 472
            SEH+ E KEKF+R+C+KS I+KR++ +TEE+LK+NPN+C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCT+SGVDMPGAD+QL KL+GL  SV R MMYQQGC AG  +LRLAKDLAENNKG RVLVVCSE   S F  P
Sbjct:   52 SEHLLEYKEKFRRICNKSKIRKRHLVITEELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTSSGVDMPGADFQLAKLLGLSSSVNRLMMYQQGCNAGAVMLRLAKDLAENNKGGRVLVVCSEVMLSVFRGP 207          

HSP 2 Score: 35.4242 bits (80), Expect = 1.483e-62
Identity = 26/75 (34.67%), Postives = 32/75 (42.67%), Query Frame = 3
Query:  462 FRGPADTHLDSLVGQALFGDGAAAVDRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXAIDGHLREVGLTFHLLKDV 686
            FRGP+    D+L+ Q LFGDG+AAV  G                             +   LRE+GLTFH  K V
Sbjct:  204 FRGPSLQQEDNLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSY-LKLQLREMGLTFHCSKAV 277          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.030e-62
Identity = 113/148 (76.35%), Postives = 133/148 (89.86%), Query Frame = 2
Query:    2 KSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 445
            KSE M+ELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYMAPSL+ RQ+I+  EVPKLGKEAA KA+KEWGQPKSKITHL+FCTTSGV+MPGADY+L  L+GL  SV+R M+Y QGC+AGGTVLR AKDLAENN GARVLVVCSE
Sbjct:   42 KSEPMSELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGADYKLANLLGLETSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSE 189          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPL (Chalcone synthase A (Fragment) OS=Ipomoea platensis GN=CHSA PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.590e-62
Identity = 113/156 (72.44%), Postives = 131/156 (83.97%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEDHGSHFPRP 472
            SEH+ E KEKF+R+C+KS I+KR++ LTEE+LK+NPN+C Y   SL+ RQD +V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRLAKDLAENNKGARVLVVCSE   S F  P
Sbjct:   50 SEHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLCTYNETSLNTRQDTLVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNISVKRLMMYQQGCNAGAAMLRLAKDLAENNKGARVLVVCSEVTLSVFRGP 205          

HSP 2 Score: 28.4906 bits (62), Expect = 5.590e-62
Identity = 19/49 (38.78%), Postives = 25/49 (51.02%), Query Frame = 1
Query:  538 IVGADPDTSVERPLYQLVSDFADDPPWT--------LTVQLTDTCAKSV 660
            IVG DP   +E PL++LVS      P T        L + LT  C+K+V
Sbjct:  227 IVGTDPRPGLETPLFELVSSAQTIIPDTDSHLKLHLLEMGLTFHCSKAV 275          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.239e-61
Identity = 104/147 (70.75%), Postives = 128/147 (87.07%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 445
            S+H+ E KEKF+R+C+KS I+KR++ LTEE+L++NP++C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD++LTKL+GL  SVKR MMYQQGC AG  +LRLAKDLAE+NKG R+LVVCSE
Sbjct:   54 SQHLLEHKEKFRRICNKSKIRKRHLVLTEELLQKNPSLCTYNETSLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFRLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDLAESNKGGRILVVCSE 200          

HSP 2 Score: 35.039 bits (79), Expect = 1.239e-61
Identity = 29/90 (32.22%), Postives = 37/90 (41.11%), Query Frame = 3
Query:  429 LLSVRRITAVTFRGPADTHLDSLVGQALFGDGAAAVDRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXAIDGH----LREVGLTFHLLKDV 686
            L+    IT   FRGP+    D+L+ Q LFGDG+AA+  G                              D H    LRE+GLTFH  + V
Sbjct:  195 LVVCSEITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGTDPRPDLETPLFELVSSAQTIVPN-----TDSHLKLTLREMGLTFHCSRAV 279          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.111e-61
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 2
Query:  182 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 445
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 88          

HSP 2 Score: 81.2629 bits (199), Expect = 2.111e-61
Identity = 47/86 (54.65%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  429 LLSVRRITAVTFRGPADTHLDSLVGQALFGDGAAAVDRGCXXXXXXXXXXXXXXXXXXXXXXXXXXXAIDGHLREVGLTFHLLKDV 686
            L+    +TAVTFRGP+DTHLDSLVGQALFGDGAAA+  G                            AIDGHLRE GLTFHLLKDV
Sbjct:   83 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVG-SDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDV 167          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.583e-59
Identity = 109/147 (74.15%), Postives = 128/147 (87.07%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 445
            SEH+ E KEKF+R+C+KS I+KR++ LT+E+LK+NPN+C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRL KDLAENNKGARVLVVCSE
Sbjct:   50 SEHLLEHKEKFRRICNKSKIRKRHLVLTKELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLVKDLAENNKGARVLVVCSE 196          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTR (Chalcone synthase A (Fragment) OS=Ipomoea triloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.247e-59
Identity = 107/147 (72.79%), Postives = 126/147 (85.71%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE 445
            SE + E KEKF+R+C+KS I+ R++ LTEE+LK++PN+C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRL KDLAENNKGARVLVVCSE
Sbjct:   50 SERLLEHKEKFRRICNKSKIRFRHLVLTEELLKKSPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLVKDLAENNKGARVLVVCSE 196          

HSP 2 Score: 26.5646 bits (57), Expect = 4.247e-59
Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 1
Query:  538 IVGADPDTSVERPLYQLVSDFADDPPWT-----LTVQ---LTDTCAKSV 660
            IVG DP   +E PL++LVS      P T     LT++   LT  C+++V
Sbjct:  227 IVGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAV 275          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: DPS2_PINST (Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.778e-58
Identity = 108/157 (68.79%), Postives = 134/157 (85.35%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYM-APSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEDHGSHFPRP 472
            +E  T+LK+KFKR+C++S IKKR+MYLTEEILK+NP +CA++  PSLD RQ ++ VEVP+LGKEAA KAI+EWGQPKS+ITHLIFCTT+  D+PGAD+++ KL+GL PSVKR  ++Q GCFAGGTVLRLAKDLAENN+GARVLVVCSE+    F  P
Sbjct:   51 NEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELCAFLEVPSLDTRQAMLAVEVPRLGKEAAEKAIEEWGQPKSRITHLIFCTTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRLAKDLAENNRGARVLVVCSENTAVTFRGP 207          
BLAST of CF417886 vs. ExPASy Swiss-Prot
Match: DPS1_PINST (Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.174e-58
Identity = 107/157 (68.15%), Postives = 133/157 (84.71%), Query Frame = 2
Query:    5 SEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYM-APSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEDHGSHFPRP 472
            +E  T+LK+KFKR+C++S IKKR+MYLTEEILK+NP +CA++  PSLD RQ ++  EVP+LGKEAA KAI+EWGQPKS+ITHLIFCTT+  D+PGAD+++ KL+GL PSVKR  ++Q GCFAGGTVLRLAKDLAENN+GARVLVVCSE+    F  P
Sbjct:   51 NEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELCAFLEVPSLDTRQAMLAAEVPRLGKEAAEKAIEEWGQPKSRITHLIFCTTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRLAKDLAENNRGARVLVVCSENTAVTFRGP 207          
The following BLAST results are available for this feature:
BLAST of CF417886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
VPS_PSINU8.715e-6368.92Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]
CHSC_IPOPU1.483e-6269.87Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
THS3_VITVI2.030e-6276.35Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHSA_IPOPL5.590e-6272.44Chalcone synthase A (Fragment) OS=Ipomoea platensi... [more]
CHSB_IPOTR1.239e-6170.75Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHS6_MEDSA2.111e-6195.45Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHSA_IPOTF3.583e-5974.15Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSA_IPOTR4.247e-5972.79Chalcone synthase A (Fragment) OS=Ipomoea triloba ... [more]
DPS2_PINST1.778e-5868.79Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=... [more]
DPS1_PINST5.174e-5868.15Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-816 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417886 ID=CF417886; Name=CF417886; organism=Citrus sinensis; type=EST; length=687bp
AAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTG
ACAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTG
AAGGAAAACCCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACG
TCAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTA
CAAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTC
ATCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCT
CACCAAACTGATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACC
AACAAGGATGTTTCGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTG
GCTGAGAACAACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGGATCA
CGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTG
GGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGGATCGTGGGTGCCG
ATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCCGACTTC
GCAGACGATCCTCCCTGGACTCTGACGGTGCAATTGACGGACACTTGCGC
GAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCC
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