CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_RHOS5 (ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGLVRG  V + G PI+VPVG  TLGRI+NVIGEPIDEKG +  +    IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   63 EGLVRGAPVTDLGGPISVPVGDATLGRILNVIGEPIDEKGPVSGDSTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKVH 173
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSJ (ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. japonica GN=atpB PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSI (ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. indica GN=atpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSA (ATP synthase subunit beta, chloroplastic OS=Oryza sativa GN=atpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ORYNI (ATP synthase subunit beta, chloroplastic OS=Oryza nivara GN=atpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_JASNU (ATP synthase subunit beta, chloroplastic OS=Jasminum nudiflorum GN=atpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG  V + G PITVPVG  TLGRI+NVIGEPIDE+G +  +    IHREAP+F EQA   +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AKAH
Sbjct:   63 DGLVRGAEVEDLGRPITVPVGPGTLGRILNVIGEPIDERGPVDAKKTYSIHREAPSFEEQAASAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKAH 173
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_GLUDA (ATP synthase subunit beta OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpD PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 78/111 (70.27%), Postives = 93/111 (83.78%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  V+ TG  ITVPVG  TLGRI+NVIGEPIDE+G +K++   PIHR+AP+F EQA   +ILVTGIKVVDLL PY +GGK+GLFGGAGVGKTV+I ELINN+AKAH
Sbjct:   80 DGLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLKGGKVGLFGGAGVGKTVIIQELINNIAKAH 190
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB3_PELCD (ATP synthase subunit beta 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD3 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELI+N+AK H
Sbjct:   66 DGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKH 176
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB1_PELCD (ATP synthase subunit beta 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.233e-39
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELI+N+AK H
Sbjct:   66 DGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIHNIAKKH 176
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOS52.233e-3971.17ATP synthase subunit beta OS=Rhodobacter sphaeroid... [more]
ATPB_ORYSJ2.233e-3969.37ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYSI2.233e-3969.37ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYSA2.233e-3969.37ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYNI2.233e-3969.37ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_JASNU2.233e-3969.37ATP synthase subunit beta, chloroplastic OS=Jasmin... [more]
ATPB_GRABC2.233e-3972.97ATP synthase subunit beta OS=Granulibacter bethesd... [more]
ATPB_GLUDA2.233e-3970.27ATP synthase subunit beta OS=Gluconacetobacter dia... [more]
ATPB3_PELCD2.233e-3971.17ATP synthase subunit beta 3 OS=Pelobacter carbinol... [more]
ATPB1_PELCD2.233e-3971.17ATP synthase subunit beta 1 OS=Pelobacter carbinol... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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