CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_PSEAK (ATP synthase subunit beta, chloroplastic OS=Pseudendoclonium akinetum GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  +++TG P+TVPVG+VTLGRI NV+GEP+D    + ++  LPIHR+APAFV+  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   74 DGLMRGMNIVDTGKPLTVPVGKVTLGRIFNVLGEPVDGLEAVDSKESLPIHRKAPAFVDLDTKLAIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 184
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_PHAAO (ATP synthase subunit beta, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 76/111 (68.47%), Postives = 92/111 (82.88%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG +V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLMRGMKVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTFPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_OENPA (ATP synthase subunit beta, chloroplastic OS=Oenothera parviflora GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_OENGL (ATP synthase subunit beta, chloroplastic OS=Oenothera glazioviana GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_OENEH (ATP synthase subunit beta, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpB PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_OENBI (ATP synthase subunit beta, chloroplastic OS=Oenothera biennis GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_OENAR (ATP synthase subunit beta, chloroplastic OS=Oenothera argillicola GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 DGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_NICSY (ATP synthase subunit beta, chloroplastic OS=Nicotiana sylvestris GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 78/111 (70.27%), Postives = 90/111 (81.08%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGL RG  V++TG+PI+VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   83 EGLTRGMEVIDTGAPISVPVGGATLGRIFNVLGEPVDNLGPVDTSTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CYACA (ATP synthase subunit beta, chloroplastic OS=Cyanidium caldarium GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EGL RG   ++TG PI++PVG+ TLGRI NV+GEPIDEKG + +   LPIHR AP F +  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINNVAKAH
Sbjct:   80 EGLKRGASAIDTGEPISIPVGKETLGRIFNVLGEPIDEKGPVISNDKLPIHRPAPKFTQLETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNVAKAH 190
[Close]
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_CHLVU (ATP synthase subunit beta, chloroplastic OS=Chlorella vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.917e-39
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 2 
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL+RG  VL++G P+ VPVG  TLGRI NV+GEP+D  G + T+  LPIHR APAFV+  T+  I  +GIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAH
Sbjct:   73 DGLMRGMEVLDSGKPLNVPVGAATLGRIFNVLGEPVDNLGPVNTKDQLPIHRSAPAFVDLDTKLSIFESGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 183
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_PSEAK2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Pseude... [more]
ATPB_PHAAO2.917e-3968.47ATP synthase subunit beta, chloroplastic OS=Phalae... [more]
ATPB_OENPA2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENGL2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENEH2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENBI2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENAR2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_NICSY2.917e-3970.27ATP synthase subunit beta, chloroplastic OS=Nicoti... [more]
ATPB_CYACA2.917e-3971.17ATP synthase subunit beta, chloroplastic OS=Cyanid... [more]
ATPB_CHLVU2.917e-3969.37ATP synthase subunit beta, chloroplastic OS=Chlore... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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