CF417904

Overview
NameCF417904
Unique NameCF417904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BACV8 (ATP synthase subunit beta OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.709e-35
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V+ TG PIT+PVG    GR+MNV+GE +D    L  E   PIHRE P F E +T Q++L TGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMELINN+AK H
Sbjct:   70 DGLQRGMEVIPTGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIHREPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKH 180          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ACTSZ (ATP synthase subunit beta OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.709e-35
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V NTG+PI+VPVG  TLGRIMNV+GEPID+KG++  E    IHREAP++ +Q+   ++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   59 DGLKRGLAVKNTGNPISVPVGTKTLGRIMNVLGEPIDQKGEIGAEETWAIHREAPSYEDQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEH 169          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_THEYD (ATP synthase subunit beta OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG +V++TG+PITVPVG+  LGRI+NVIGEP+DE G ++ +   PIH  AP F EQ+   Q   TG+KV DLL P+ RGGK+G+FGGAGVGKTV+IME+I+N+A  H
Sbjct:   68 DGLVRGMKVVDTGAPITVPVGKPVLGRIINVIGEPVDEMGPIQAQDKYPIHISAPEFTEQSPTTQQFETGVKVFDLLVPFVRGGKMGMFGGAGVGKTVIIMEMIHNIAMKH 178          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_SULNB (ATP synthase subunit beta OS=Sulfurovum sp. (strain NBC37-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 71/111 (63.96%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            EG+VRGQ V  TG  I VPVG   LGRI NVIGE IDE G ++ + +  IHR+ P F +Q+T+ ++  TGIKVVDLLAPY +GGK+GLFGGAGVGKTV+IMELINNVA  H
Sbjct:   63 EGVVRGQEVKATGDSIQVPVGEEVLGRIFNVIGEAIDEAGPVEAKTHWSIHRDPPPFEDQSTKTEVFETGIKVVDLLAPYSKGGKVGLFGGAGVGKTVIIMELINNVAMKH 173          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BACCR (ATP synthase subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G+L  + H  PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+A+ H
Sbjct:   65 DGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGELPADVHRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEH 176          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BACCN (ATP synthase subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG  V +TG PI+VPVG  TLGR+ NV+GE ID  G++  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+A+ H
Sbjct:   61 DGLVRGTEVEDTGRPISVPVGDATLGRVFNVLGEAIDLDGEIPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEH 172          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_BACC4 (ATP synthase subunit beta OS=Bacillus cereus (strain B4264) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G+L  + H  PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+A+ H
Sbjct:   65 DGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGELPADVHRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEH 176          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_ALHEH (ATP synthase subunit beta OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.268e-34
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL R ++V  TG PI+VPVG+ TLGRIM+V+GEP+DEKG ++TE    IHR AP+F EQA   ++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELI N+A  H
Sbjct:   59 DGLKRSEKVSATGKPISVPVGKGTLGRIMDVLGEPVDEKGAVETEERWGIHRSAPSFAEQAGGAELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEH 169          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_VIBAL (ATP synthase subunit beta OS=Vibrio alginolyticus GN=atpD PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V+NTG+PI+VPVG  TLGRIMNV+G+ IDE+G++  E    IHR AP++ EQ+ E  +L TG+KV+DL+ P+ +GGKIGLFGGAGVGKTV +MELINN+A  H
Sbjct:   61 DGLRRGVEVVNTGAPISVPVGTKTLGRIMNVLGDAIDERGEVGAEEVYSIHRSAPSYEEQSNEIALLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQH 171          
BLAST of CF417904 vs. ExPASy Swiss-Prot
Match: ATPB_NEIG2 (ATP synthase subunit beta OS=Neisseria gonorrhoeae (strain NCCP11945) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 2
Query:    2 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 334
            +GL RG  V NTGSPITVPVG+ TLGRI++V+G P+DE G + T+    IH+ AP F E ++  ++L TGIKV+DLL P+ +GGK+GLFGGAGVGKTV +MELINN+AKAH
Sbjct:   59 DGLKRGMTVSNTGSPITVPVGKGTLGRIVDVLGTPVDEAGPIDTDKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAH 169          
The following BLAST results are available for this feature:
BLAST of CF417904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BACV89.709e-3563.96ATP synthase subunit beta OS=Bacteroides vulgatus ... [more]
ATPB_ACTSZ9.709e-3561.26ATP synthase subunit beta OS=Actinobacillus succin... [more]
ATPB_THEYD1.268e-3460.36ATP synthase subunit beta OS=Thermodesulfovibrio y... [more]
ATPB_SULNB1.268e-3463.96ATP synthase subunit beta OS=Sulfurovum sp. (strai... [more]
ATPB_BACCR1.268e-3466.07ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACCN1.268e-3466.07ATP synthase subunit beta OS=Bacillus cereus subsp... [more]
ATPB_BACC41.268e-3466.07ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_ALHEH1.268e-3462.16ATP synthase subunit beta OS=Alkalilimnicola ehrli... [more]
ATPB_VIBAL1.656e-3461.26ATP synthase subunit beta OS=Vibrio alginolyticus ... [more]
ATPB_NEIG21.656e-3462.16ATP synthase subunit beta OS=Neisseria gonorrhoeae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-834 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417904 ID=CF417904; Name=CF417904; organism=Citrus sinensis; type=EST; length=336bp
TGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCAATCA
CTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCATTGGA
GAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGCCCAT
CCACAGAGAGGCTCCAGCATTCGTTGAGCAGGCAACTGAACAACAGATTC
TAGTCACTGGCATCAAGGTTGTTGATCTCCTTGCTCCATACCAAAGAGGA
GGGAAAATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTAT
TATGGAACTTATTAACAATGTTGCAAAGGCTCATGG
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