CF417915

Overview
NameCF417915
Unique NameCF417915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX6_CHICK (Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG---LGDLKYPLIADITKSISKSYGVLIP 589
            L+G+ AP+F A+         ++  D++G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW +      G   +  L +P+IAD  + ++   G+L P
Sbjct:    5 LLGDEAPNFEADTTQG----GIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFSKRNVKMIALSIDSVPDHLAWSKDINAYNGDQPVEKLPFPIIADKDRELAVKLGMLDP 118          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_PYRFU (Probable peroxiredoxin OS=Pyrococcus furiosus GN=PF1033 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  308 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGS 595
            +KL D+  K  K+ +LF +P DFT VC TE      R  +F +L  E +G+S D VFSHL W++  ++  G+ ++++P+IAD    +++  G++  GS
Sbjct:   20 IKLPDHFTKQGKWFMLFSHPADFTPVCTTEFYGLQIRLEKFRELGVEPIGLSVDQVFSHLKWMEWIKEKLGV-EIEFPVIADDRGDLAEKLGMIPSGS 116          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX6_BOVIN (Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG---LGDLKYPLIADITKSISKSYGVLIP 589
            L+G+ AP+F A     +    ++  DY+G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW +      G      L +P+I D  + ++   G+L P
Sbjct:    6 LLGDEAPNFEANTTIGR----IRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDP 119          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_STAHJ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ahpC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.561e-11
Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  296 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            EF  V   D  G  + ++ FYP DF+FVCPTE+    ++Y + + L   +  VSTD+ F H AW      S  +  ++Y +I D +++I++++ VL   +G
Sbjct:   22 EFKEVSQDDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYDKLQDLGVNVFSVSTDTHFVHKAW---HDHSDAISKIQYQMIGDPSQTITRNFDVLDEEAG 118          

HSP 2 Score: 20.7866 bits (42), Expect = 3.561e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  591 DQGIALRGLFIIDKE 635
            + G+A RG FIID +
Sbjct:  116 EAGLAQRGTFIIDPD 130          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TSA_ONCVO (Putative peroxiredoxin OS=Onchocerca volvulus GN=TSA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  251 GNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT-----DRKSGGLGD---LKYPLIADITKSISKSYGVLIP 589
            GN  PDF AE   ++ FI+    D+IGK  + ILF +P DFT VC TE+        EF+K N +++G+S DS  SH  W          K  G      L YP+IAD  +S++   G++ P
Sbjct:    8 GNKFPDFQAET--NEGFIS-SFYDWIGKDSWAILFSHPRDFTPVCTTELARLVQLAPEFKKRNVKLIGLSCDSADSHSKWADDILALYKMKCVGCDSEKKLPYPIIADEDRSLATELGMMDP 126          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRXQ_ARATH (Peroxiredoxin Q, chloroplastic OS=Arabidopsis thaliana GN=PRXQ PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.744e-11
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 2
Query:  251 GNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGV 580
            G  APDF  +   DQ    V L  Y GK  V+L+FYP D T  C  +  AF D Y +F+K   E++G+S D   SH A+    +       L Y L++D    + K +GV
Sbjct:   72 GQAAPDFTLK---DQNGKPVSLKKYKGKP-VVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYK-------LPYTLLSDEGNKVRKDWGV 170          

HSP 2 Score: 21.9422 bits (45), Expect = 7.744e-11
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            +L K GV+Q    N     + +DETL+ L
Sbjct:  185 VLDKNGVVQLIYNNQFQPEKHIDETLKFL 213          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX6_PIG (Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGG---LGDLKYPLIADITKSISKSYGVLIP 589
            L+G+ AP+F A     +    ++  D++G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW +      G      L +P+I D ++ ++   G+L P
Sbjct:    6 LLGDEAPNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDP 119          
The following BLAST results are available for this feature:
BLAST of CF417915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
PRDX6_CHICK1.730e-1133.90Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=... [more]
TDXH_PYRFU2.260e-1136.73Probable peroxiredoxin OS=Pyrococcus furiosus GN=P... [more]
PRDX6_BOVIN2.951e-1133.90Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3[more]
AHPC_STAHJ3.561e-1133.66Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TSA_ONCVO3.855e-1137.70Putative peroxiredoxin OS=Onchocerca volvulus GN=T... [more]
PRXQ_ARATH7.744e-1136.36Peroxiredoxin Q, chloroplastic OS=Arabidopsis thal... [more]
PRDX6_PIG8.587e-1133.05Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-845 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417915 ID=CF417915; Name=CF417915; organism=Citrus sinensis; type=EST; length=708bp
AACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTGCCACGGCAACAG
CCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCTTCCTCAATCTCC
CCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCC
CCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTT
CTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTG
GGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTT
CATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCT
TTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCT
TTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGG
TGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACA
GAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATC
ACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGGATCAGGGAA
TTGCATTGAGAGGACTCTTTATTATTGACAAAGAAAGGAGTCATCCAGCA
CTCAACCATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAAACACTGA
GAACACTT
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