CF417915 | Citrus Genome Database

Overview


Name	CF417915
Unique Name	CF417915
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	708

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.199e-39
Identity = 69/118 (58.47%), Postives = 84/118 (71.19%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G  APDF A AV  D +F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF K+N E++G S DS F HLAW+ T +K GGLG +  PL++D  + I+K YG+L    G
Sbjct:    8 IGKLAPDFQATAVMPDGQFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRSEEFRKINCEVIGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSDTKRVIAKDYGILKEDEG 124

HSP 2 Score: 35.4242 bits (80), Expect = 2.199e-39
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG ++  TIN+L +GRSVDETLR
Sbjct:  132 IIDDKGTLRQITINDLPVGRSVDETLR 158

HSP 3 Score: 25.0238 bits (53), Expect = 2.199e-39
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISYRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDX_CYNPY (Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.717e-39
Identity = 69/118 (58.47%), Postives = 84/118 (71.19%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G  AP+F A+AV    EF ++KL+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF K+N E++  S DS F HLAW  T RK GGLG +K PL+AD  ++IS+ YGVL    G
Sbjct:    8 IGKPAPEFQAKAVMPGGEFKDIKLADYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFRKINCELIAASVDSHFCHLAWTNTSRKEGGLGSMKIPLVADTKRTISQDYGVLKEDEG 124

HSP 2 Score: 36.5798 bits (83), Expect = 3.717e-39
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  TIN+L +GRSVDETLR
Sbjct:  132 IIDDKGILRQITINDLPVGRSVDETLR 158

HSP 3 Score: 25.409 bits (54), Expect = 3.717e-39
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.056e-38
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 2

Query:  254 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKS-GGLGDLKYPLIADITKSISKSYGVL 583
            N APDF+  AV + +F  + + DY GK ++ILFFYPLDFTFVCPTEITAFSDR  EF+KLNTE++  S DS FSHLAW+QT R   GGLGD+K P++AD  K I+ ++GVL
Sbjct:   37 NKAPDFSGTAVVNGDFKTISMKDYKGK-WLILFFYPLDFTFVCPTEITAFSDRCAEFQKLNTELIACSCDSHFSHLAWIQTPRSEVGGLGDMKIPVLADFNKDIANAFGVL 146

HSP 2 Score: 37.7354 bits (86), Expect = 1.056e-38
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            L+   G I+HS +N+L++GRSVDE  RTL
Sbjct:  159 LIDPSGEIRHSLVNDLSVGRSVDEAFRTL 187

HSP 3 Score: 21.557 bits (44), Expect = 1.056e-38
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            + GI+ RGLF+ID
Sbjct:  149 ETGISYRGLFLID 161

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX3_BOVIN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.779e-38
Identity = 72/140 (51.43%), Postives = 91/140 (65.00%), Query Frame = 2

Query:  179 SLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +L  GS   K     +S    P V   AP F   AV   EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+ +EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YGVL+ G G
Sbjct:   43 ALWSGSDQAKFAFSTSSSYHAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPG 181

HSP 2 Score: 35.4242 bits (80), Expect = 1.779e-38
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++   GVI+H ++N+L +GRSV+ETLR
Sbjct:  189 IIDPNGVIKHLSVNDLPVGRSVEETLR 215

HSP 3 Score: 24.2534 bits (51), Expect = 1.779e-38
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3

Query:  597 GIALRGLFIID 629
            G+ALRGLFIID
Sbjct:  181 GLALRGLFIID 191

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX3_MOUSE (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.313e-38
Identity = 69/138 (50.00%), Postives = 93/138 (67.39%), Query Frame = 2

Query:  185 SRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            S  ++ + +F   +S   P +  + AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++DITK IS+ YGVL+  +G
Sbjct:   46 SASAQGKSAFSTSSSFHTPAVTQH-APYFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAG 181

HSP 2 Score: 35.039 bits (79), Expect = 2.313e-38
Identity = 13/27 (48.15%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++   GV++H ++N+L +GRSV+ETLR
Sbjct:  189 IIDPNGVVKHLSVNDLPVGRSVEETLR 215

HSP 3 Score: 25.0238 bits (53), Expect = 2.313e-38
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3

Query:  597 GIALRGLFIID 629
            GIALRGLFIID
Sbjct:  181 GIALRGLFIID 191

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.031e-38
Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAWV T +K GGLG +  PL++D  ++I++ YGVL    G
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

HSP 2 Score: 36.1946 bits (82), Expect = 3.031e-38
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  T+N+L +GRSVDETLR
Sbjct:  132 IIDDKGILRQITVNDLPVGRSVDETLR 158

HSP 3 Score: 25.409 bits (54), Expect = 3.031e-38
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.591e-38
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCI 607
            +   AP +   AV D EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+T  ISK YGV +  SG+ +
Sbjct:   81 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 199

HSP 2 Score: 35.8094 bits (81), Expect = 6.591e-38
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  T+N+L +GRSVDETLR
Sbjct:  204 IIDDKGILRQITLNDLPVGRSVDETLR 230

HSP 3 Score: 23.0978 bits (48), Expect = 6.591e-38
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D G  LRGLFIID
Sbjct:  194 DSGHTLRGLFIID 206

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.657e-38
Identity = 65/118 (55.08%), Postives = 86/118 (72.88%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+K+N +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YGVL    G
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

HSP 2 Score: 36.1946 bits (82), Expect = 6.657e-38
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  T+N+L +GRSVDETLR
Sbjct:  132 IIDDKGILRQITVNDLPVGRSVDETLR 158

HSP 3 Score: 25.409 bits (54), Expect = 6.657e-38
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.657e-38
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G+ AP F A AV  D +F ++ L+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YGVL    G
Sbjct:    8 IGHRAPQFKATAVMPDGQFKDISLADYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 124

HSP 2 Score: 36.5798 bits (83), Expect = 6.657e-38
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  TIN+L +GRSVDETLR
Sbjct:  132 IIDDKGILRQITINDLPVGRSVDETLR 158

HSP 3 Score: 25.409 bits (54), Expect = 6.657e-38
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.686e-38
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 2

Query:  245 LVGNTAPDFAAEAVF-DQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +VG  AP F  EAV   +EF  V L + +   K+ +LFFYP+DFTFVCPTEITA SDRY EFE L+ E++GVSTD++ +HLAW+ TDRK  GLG LKYPL AD    +S+ YGVLI   G
Sbjct:    5 MVGKQAPRFEMEAVLASKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEEG 124

HSP 2 Score: 30.0314 bits (66), Expect = 8.686e-38
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++  +G +Q+ T+ +  IGR VDETLR L
Sbjct:  132 IINPEGELQYQTVFHNNIGRDVDETLRVL 160

HSP 3 Score: 25.7942 bits (55), Expect = 8.686e-38
Identity = 10/15 (66.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  591 DQGIALRGLFIIDKE 635
            ++G+ALRGLFII+ E
Sbjct:  122 EEGVALRGLFIINPE 136

The following BLAST results are available for this feature:

BLAST of CF417915 vs. ExPASy Swiss-Prot

BLAST of CF417915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127


Match Name	E-value	Identity	Description
PRDX1_GECJA	2.199e-39	58.47	Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S...	[more]
TDX_CYNPY	3.717e-39	58.47	Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1	[more]
TDX1_BRUMA	1.056e-38	61.26	Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ...	[more]
PRDX3_BOVIN	1.779e-38	51.43	Thioredoxin-dependent peroxide reductase, mitochon...	[more]
PRDX3_MOUSE	2.313e-38	50.00	Thioredoxin-dependent peroxide reductase, mitochon...	[more]
PRDX1_HUMAN	3.031e-38	56.78	Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1	[more]
PRDX4_HUMAN	6.591e-38	53.33	Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1	[more]
PRDX1_MYOLU	6.657e-38	55.08	Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ...	[more]
PRDX1_BOVIN	6.657e-38	55.93	Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1	[more]
YKUU_BACSU	8.686e-38	57.50	Thioredoxin-like protein ykuU OS=Bacillus subtilis...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-845 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417915 ID=CF417915; Name=CF417915; organism=Citrus sinensis; type=EST; length=708bp
AACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTGCCACGGCAACAG
CCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCTTCCTCAATCTCC
CCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCC
CCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTT
CTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTG
GGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTT
CATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCT
TTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCT
TTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGG
TGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACA
GAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATC
ACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGGATCAGGGAA
TTGCATTGAGAGGACTCTTTATTATTGACAAAGAAAGGAGTCATCCAGCA
CTCAACCATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAAACACTGA
GAACACTT