CF417915 | Citrus Genome Database

Overview


Name	CF417915
Unique Name	CF417915
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	708

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.885e-37
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 2

Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            P V   AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YGVL+  +G
Sbjct:   64 PAVTQHAPHFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDLTKQISRDYGVLLESAG 181

HSP 2 Score: 33.113 bits (74), Expect = 1.885e-37
Identity = 13/27 (48.15%), Postives = 21/27 (77.78%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++   GVI+H ++N+L +GRSV+E LR
Sbjct:  189 IIDPNGVIKHLSVNDLPVGRSVEEPLR 215

HSP 3 Score: 25.0238 bits (53), Expect = 1.885e-37
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 3

Query:  597 GIALRGLFIID 629
            GIALRGLFIID
Sbjct:  181 GIALRGLFIID 191

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.900e-37
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G+ AP F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YGVL    G
Sbjct:    8 IGHPAPSFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

HSP 2 Score: 34.2686 bits (77), Expect = 1.900e-37
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  TIN+L +GRSVDE LR
Sbjct:  132 IIDDKGILRQITINDLPVGRSVDEILR 158

HSP 3 Score: 25.409 bits (54), Expect = 1.900e-37
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 5.367e-37
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCI 607
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG +  PL+AD+   ISK YGV +  SG+ +
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTL 202

HSP 2 Score: 35.8094 bits (81), Expect = 5.367e-37
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  T+N+L +GRSVDETLR
Sbjct:  207 IIDDKGILRQITLNDLPVGRSVDETLR 233

HSP 3 Score: 23.0978 bits (48), Expect = 5.367e-37
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D G  LRGLFIID
Sbjct:  197 DSGHTLRGLFIID 209

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.367e-37
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCI 607
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YGV +  SG+ +
Sbjct:   83 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTL 201

HSP 2 Score: 36.1946 bits (82), Expect = 5.367e-37
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KGV++  T+N+L +GRSVDETLR
Sbjct:  206 IIDDKGVLRQITLNDLPVGRSVDETLR 232

HSP 3 Score: 23.0978 bits (48), Expect = 5.367e-37
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D G  LRGLFIID
Sbjct:  196 DSGHTLRGLFIID 208

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.367e-37
Identity = 62/120 (51.67%), Postives = 84/120 (70.00%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCI 607
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YGV +  SG+ +
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTL 202

HSP 2 Score: 36.1946 bits (82), Expect = 5.367e-37
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KGV++  T+N+L +GRSVDETLR
Sbjct:  207 IIDDKGVLRQITLNDLPVGRSVDETLR 233

HSP 3 Score: 23.0978 bits (48), Expect = 5.367e-37
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D G  LRGLFIID
Sbjct:  197 DSGHTLRGLFIID 209

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.173e-37
Identity = 63/118 (53.39%), Postives = 79/118 (66.95%), Query Frame = 2

Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +VG  AP F  +A+ D E  +V LSDY GK YVILFFYP+DFTFVCPTEI AF+DR  EF +   ++L  STDS + HLAW    RK GG+  ++ P++AD    IS+ YGVLI   G
Sbjct:    4 VVGKLAPSFTCKALVDGELKDVSLSDYRGK-YVILFFYPMDFTFVCPTEIIAFNDRADEFHQRGCQLLACSTDSGYCHLAWNNVSRKEGGVQGMRIPMLADTNHKISRDYGVLIEDQG 120

HSP 2 Score: 36.1946 bits (82), Expect = 9.173e-37
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++  KGV++  TIN+L +GRSVDE LR L
Sbjct:  128 IIDDKGVLRQITINDLPVGRSVDEALRLL 156

HSP 3 Score: 29.261 bits (64), Expect = 9.173e-37
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            DQGIALRGLFIID
Sbjct:  118 DQGIALRGLFIID 130

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.191e-36
Identity = 66/118 (55.93%), Postives = 85/118 (72.03%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YGVL    G
Sbjct:    8 IGYPAPNFKATAVMPDGQFKDISLSEYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEG 124

HSP 2 Score: 33.4982 bits (75), Expect = 1.191e-36
Identity = 13/27 (48.15%), Postives = 21/27 (77.78%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  TIN+L +GRSVDE +R
Sbjct:  132 IIDDKGILRQITINDLPVGRSVDEIIR 158

HSP 3 Score: 25.409 bits (54), Expect = 1.191e-36
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.011e-36
Identity = 65/118 (55.08%), Postives = 85/118 (72.03%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YGVL    G
Sbjct:    8 IGYPAPNFKATAVMPDGQFRDICLSEYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEG 124

HSP 2 Score: 34.2686 bits (77), Expect = 2.011e-36
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  KG+++  TIN+L +GRSVDE LR
Sbjct:  132 IIDDKGILRQITINDLPVGRSVDEILR 158

HSP 3 Score: 25.409 bits (54), Expect = 2.011e-36
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GI+ RGLFIID
Sbjct:  122 DEGISFRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 5.738e-36
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +G  AP+F   AV + +F  + L  + GK YV+L FYPLDFTFVCPTEI AFSDR  EF++L+  ++  STDS FSHLAWV TDRK GGLG +  P++A     IS++YGVL    G
Sbjct:   10 IGQPAPNFKTTAVVNGDFKEISLGQFKGK-YVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTDRKMGGLGQMNIPILAYTNHVISRAYGVLKEDDG 125

HSP 2 Score: 35.8094 bits (81), Expect = 5.738e-36
Identity = 15/29 (51.72%), Postives = 22/29 (75.86%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++  KG++   TIN+L +GRSVDETLR +
Sbjct:  133 IIDPKGILGQITINDLPVGRSVDETLRLI 161

HSP 3 Score: 25.409 bits (54), Expect = 5.738e-36
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D GIA RGLFIID
Sbjct:  123 DDGIAYRGLFIID 135

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: YCF42_ODOSI (Putative peroxiredoxin ycf42 OS=Odontella sinensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.258e-35
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = 2

Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 583
            P +G T P+F    V+ +    ++LSDY GKKYVILFFYP +FT + PTE+   SDR +EF KL+T+IL +S DS FSHL ++  +R+ GGL DL YPL++D+T++I++ Y VL
Sbjct:    5 PKIGKTPPNFLTIGVYKKRLGKIRLSDYRGKKYVILFFYPANFTAISPTELMLLSDRISEFRKLSTQILAISVDSPFSHLQYLLCNREEGGLEDLNYPLVSDLTQTITRDYQVL 118

HSP 2 Score: 35.8094 bits (81), Expect = 1.258e-35
Identity = 14/29 (48.28%), Postives = 23/29 (79.31%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+G+IQ+ T+NNL  GR+++E LR L
Sbjct:  130 IIDKEGIIQYYTVNNLLCGRNINELLRIL 158

HSP 3 Score: 26.9498 bits (58), Expect = 1.258e-35
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  591 DQGIALRGLFIIDKE 635
            D+G+A  GLFIIDKE
Sbjct:  120 DEGLAFPGLFIIDKE 134

The following BLAST results are available for this feature:

BLAST of CF417915 vs. ExPASy Swiss-Prot

BLAST of CF417915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127


Match Name	E-value	Identity	Description
PRDX3_RAT	1.885e-37	55.46	Thioredoxin-dependent peroxide reductase, mitochon...	[more]
PRDX1_RAT	1.900e-37	55.93	Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1...	[more]
PRDX4_BOVIN	5.367e-37	52.50	Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1	[more]
PRDX4_RAT	5.367e-37	51.67	Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2...	[more]
PRDX4_MOUSE	5.367e-37	51.67	Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1	[more]
TDX_ECHGR	9.173e-37	53.39	Thioredoxin peroxidase OS=Echinococcus granulosus ...	[more]
PRDX1_MOUSE	1.191e-36	55.93	Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1	[more]
PRDX1_CRIGR	2.011e-36	55.08	Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=...	[more]
TDX2_BRUMA	5.738e-36	53.85	Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2...	[more]
YCF42_ODOSI	1.258e-35	50.88	Putative peroxiredoxin ycf42 OS=Odontella sinensis...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-845 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417915 ID=CF417915; Name=CF417915; organism=Citrus sinensis; type=EST; length=708bp
AACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTGCCACGGCAACAG
CCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCTTCCTCAATCTCC
CCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCC
CCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTT
CTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTG
GGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTT
CATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCT
TTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCT
TTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGG
TGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACA
GAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATC
ACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGGATCAGGGAA
TTGCATTGAGAGGACTCTTTATTATTGACAAAGAAAGGAGTCATCCAGCA
CTCAACCATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAAACACTGA
GAACACTT