CF417915

Overview
NameCF417915
Unique NameCF417915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 574
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNF 108          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_AERPE (Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_2278 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.793e-14
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 2
Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSD-YIGK-KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 583
            PL+G   P+   E   D   I  KL D Y+ + K+ +LF +P DFT VC TE  +F+ RY +F++L  +++G+S DSVFSH+ W +   +  G+  + +P+IAD   ++++  G+L
Sbjct:    6 PLIGERFPEM--EVTTDHGVI--KLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLL 116          

HSP 2 Score: 21.557 bits (44), Expect = 1.793e-14
Identity = 10/27 (37.04%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLR 702
            ++  +GVI+      + +GR VDE LR
Sbjct:  130 IVDARGVIRTMLYYPMELGRLVDEILR 156          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH1_PICTO (Probable peroxiredoxin 1 OS=Picrophilus torridus GN=PTO0377 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 2
Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCIERTLY 622
            PL+G   P+            N+KL D    K+ +LF +P DFT VC TE  +F+  + +F+KLNTE++G+S DS  SH+ W+   +++  + D+K+P+IAD    ++   G++   S     R ++
Sbjct:    6 PLIGEKFPEMEVVTNLG----NIKLPDDFKGKWFVLFSHPGDFTPVCTTEFFSFAKHHDDFKKLNTELIGLSVDSKISHIEWINWIKQNLKI-DIKFPIIADPMGHVATKLGMIQAQSATQTVRAVF 127          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 574
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNF 108          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 574
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNF 108          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 574
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNF 108          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 40/110 (36.36%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSY 574
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNF 108          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH1_THEAC (Probable peroxiredoxin 1 OS=Thermoplasma acidophilum GN=Ta0473 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.035e-14
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCIERTLY 622
            PL+G   P+   E        ++KL D    ++ +LF +P DFT VC TE  +F+ R+ +F+K+NT+++G+S DS  SH+ WV   R +  + ++ +P+I D    ++   G++   S     R ++
Sbjct:    8 PLIGEKFPEMTVETTHG----SMKLPDQYKGRWFMLFSHPGDFTPVCTTEFYSFARRFEDFQKINTDLIGLSVDSTISHIEWVNWIRDNLKI-EVPFPIIGDSMGRVATRLGMIQAESSTSTVRAVF 129          

HSP 2 Score: 21.557 bits (44), Expect = 3.035e-14
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  667 LAIGRSVDETLRTL 708
            L IGR+VDE LR +
Sbjct:  145 LEIGRNVDELLRAI 158          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_NANEQ (Probable peroxiredoxin OS=Nanoarchaeum equitans GN=NEQ191 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 35/105 (33.33%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  308 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCIERTLY 622
            ++L D+   K+ +LF +P DFT VC TE   F+  Y +F+ +NTE++G+S D VFSH+ W++  ++   + ++ +P+IAD    +++  G++ P  G    R ++
Sbjct:   20 MRLPDHYRGKWFVLFSHPADFTPVCTTEFVEFARNYDKFKAMNTELIGLSIDQVFSHIKWIEWIKEKFNV-EIPFPVIADDQGELARMLGMISPYKGTNTVRAVF 123          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: REHY_WHEAT (1-Cys peroxiredoxin PER1 OS=Triticum aestivum GN=PER1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP----GSGNCIERTLY 622
            +G+T P+   ++   +    +++ DY+G  YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W +          + YP++AD  +S  K   ++ P      G    RTL+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGNGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMADPDRSAIKQLNMVDPDEKDAEGQLPSRTLH 130          
The following BLAST results are available for this feature:
BLAST of CF417915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
AHPC_SALTI1.672e-1437.27Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
TDXH_AERPE1.793e-1437.07Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_... [more]
TDXH1_PICTO2.184e-1433.07Probable peroxiredoxin 1 OS=Picrophilus torridus G... [more]
AHPC_SHIFL2.184e-1436.36Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI2.184e-1436.36Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL62.184e-1436.36Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO572.184e-1436.36Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
TDXH1_THEAC3.035e-1430.71Probable peroxiredoxin 1 OS=Thermoplasma acidophil... [more]
TDXH_NANEQ3.725e-1433.33Probable peroxiredoxin OS=Nanoarchaeum equitans GN... [more]
REHY_WHEAT8.298e-1433.331-Cys peroxiredoxin PER1 OS=Triticum aestivum GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-845 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417915 ID=CF417915; Name=CF417915; organism=Citrus sinensis; type=EST; length=708bp
AACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTGCCACGGCAACAG
CCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCTTCCTCAATCTCC
CCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCC
CCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTT
CTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTG
GGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTT
CATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCT
TTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCT
TTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGG
TGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACA
GAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATC
ACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGGATCAGGGAA
TTGCATTGAGAGGACTCTTTATTATTGACAAAGAAAGGAGTCATCCAGCA
CTCAACCATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAAACACTGA
GAACACTT
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