CF417915

Overview
NameCF417915
Unique NameCF417915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: REHY_HORVU (1-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP----GSGNCIERTLY 622
            +G+T P+   ++   +    +++ DY+G  YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W +          + YP++AD  +S  K   ++ P      G    RTL+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGNGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMADPDRSAIKQLNMVDPDEKDAQGQLPSRTLH 130          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_BACSU (Alkyl hydroperoxide reductase subunit C OS=Bacillus subtilis GN=ahpC PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  245 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            L+G     F A+A  + EFI+V   D  G+ + +  FYP DF+FVCPTE+    ++Y   ++L  E+  VSTD+ F H  W  +  K   +  + Y +I D +++IS+++ VL   +G
Sbjct:    3 LIGKEVLPFEAKAFKNGEFIDVTNEDLKGQ-WSVFCFYPADFSFVCPTELEDLQEQYAALKELGVEVYSVSTDTHFVHKGWHDSSEK---ISKITYAMIGDPSQTISRNFDVLDEETG 116          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH1_SULME (Probable peroxiredoxin 1 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 35/88 (39.77%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  335 KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            K++ LF +P DFT VC TE   FS  Y EF++LN E++G+S DS++SH+ W++  ++  G+  + +PLIAD  K +++   ++   SG
Sbjct:   30 KWLFLFAHPADFTPVCTTEFVGFSKVYEEFKRLNVELVGMSVDSIYSHIEWLKDIQERYGI-QVPFPLIADPDKRLARLLDIIDEASG 116          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRX1_YEAST (Mitochondrial peroxiredoxin PRX1 OS=Saccharomyces cerevisiae GN=PRX1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 34/112 (30.36%), Postives = 67/112 (59.82%), Query Frame = 2
Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 583
            + + AP+F A+    +    +   DY+G  + +LF +P DFT VC TE++AF+    EF+K N +++G+S + V SH  W+Q  ++   + ++ +P+I D  ++++  Y ++
Sbjct:   51 INSDAPNFDADTTVGK----INFYDYLGDSWGVLFSHPADFTPVCTTEVSAFAKLKPEFDKRNVKLIGLSVEDVESHEKWIQDIKEIAKVKNVGFPIIGDTFRNVAFLYDMV 158          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_TREDE (Probable peroxiredoxin OS=Treponema denticola GN=TDE_0011 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCIERTLY 622
            PL+G+  P  A           +KL   +   + +LF +P DFT VC TE  AF     EFEKL  +++G+S D + SHL W++  ++  G+ ++ +P+IA    SI+   G+L PG G    R ++
Sbjct:    2 PLLGDDFPQLAVSTTHGP----MKLPCDLKGSWFVLFSHPADFTPVCTTEFVAFQKLMPEFEKLGVKLIGLSIDQIQSHLKWIEWIKEKLGV-EITFPVIA-ANDSIANQIGLLHPGKGTNTVRAVF 122          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_METTH (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum GN=MTH_159 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIP 589
            PL+G+  P+   +         ++L D    K+ ILF +P DFT VC TE  AF + Y E  +L+ E++G+S D VFSH+ W++   ++    ++++P+IAD T  ++ + G++ P
Sbjct:    2 PLIGDKFPEMEVQTTHGP----MELPDEFEGKWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIAENLDT-EIEFPVIAD-TGRVADTLGLIHP 111          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_CHLTE (Probable peroxiredoxin OS=Chlorobium tepidum GN=CT1747 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  242 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCIERTLY 622
            PL+G+  P+   +       I   L       + +LF +P DFT VC TE  AF  R   FEK+  +++G+S D VFSH+ WV+  +++  + D+ +P++A     I+   G+L PG G    R ++
Sbjct:    2 PLLGDDFPELKVQTTHGPMNIPGDLKG----SWFVLFSHPADFTPVCTTEFVAFQQRVEAFEKIGCKLIGMSVDQVFSHIKWVEWIKENLDV-DITFPIVA-ANDRIANKLGMLHPGKGTNTVRAVF 122          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: YNDH_BACYN (Putative peroxiredoxin in ndh 5'region (Fragment) OS=Bacillus sp. (strain YN-1) PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  296 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            EFI V    + G+ + +L FYP DFTFVCPTE+    + Y   ++L  E+   STD+ F+H  W  +   S  +G + Y +I D ++++S+++ VL   SG
Sbjct:    1 EFIEVSEESFKGQ-WSVLCFYPADFTFVCPTELEDLQNEYAALKELGVEVFSASTDTHFTHKGWHDS---SETIGKITYAMIGDPSQTLSRNFDVLNEVSG 97          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: AHPC_STAES (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.613e-12
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  296 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++Y + ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ VL   SG
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAW---HDHSDAISKLEYSMIGDPSQTITRNFDVLDEESG 118          

HSP 2 Score: 21.1718 bits (43), Expect = 2.613e-12
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  591 DQGIALRGLFIIDKE 635
            + G+A RG FIID +
Sbjct:  116 ESGLAQRGTFIIDPD 130          
BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: TDXH_PYRAB (Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYRAB10420 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  308 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSGNCIERTLY 622
            +KL D+  K  K+ ILF +P DFT VC TE      R  EF KL  E +G+S D VF+H+ W++  +++ G+ ++++P+IAD    +++  G +IP       R ++
Sbjct:   20 IKLPDHFTKQGKWFILFSHPADFTPVCTTEFYGMQKRLEEFRKLGVEPIGLSVDQVFAHIKWMEWIKENLGV-EIEFPIIADDRGELAEKLG-MIPSGATITARAVF 124          
The following BLAST results are available for this feature:
BLAST of CF417915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
REHY_HORVU8.298e-1433.331-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER... [more]
AHPC_BACSU8.298e-1434.75Alkyl hydroperoxide reductase subunit C OS=Bacillu... [more]
TDXH1_SULME1.849e-1339.77Probable peroxiredoxin 1 OS=Sulfolobus metallicus ... [more]
PRX1_YEAST4.118e-1330.36Mitochondrial peroxiredoxin PRX1 OS=Saccharomyces ... [more]
TDXH_TREDE5.379e-1333.86Probable peroxiredoxin OS=Treponema denticola GN=T... [more]
TDXH_METTH1.198e-1233.62Probable peroxiredoxin OS=Methanobacterium thermoa... [more]
TDXH_CHLTE1.565e-1232.28Probable peroxiredoxin OS=Chlorobium tepidum GN=CT... [more]
YNDH_BACYN2.044e-1236.63Putative peroxiredoxin in ndh 5'region (Fragment) ... [more]
AHPC_STAES2.613e-1236.63Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TDXH_PYRAB2.669e-1235.51Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYR... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-845 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417915 ID=CF417915; Name=CF417915; organism=Citrus sinensis; type=EST; length=708bp
AACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTGCCACGGCAACAG
CCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCTTCCTCAATCTCC
CCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCC
CCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTT
CTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTG
GGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTT
CATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCT
TTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCT
TTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGG
TGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACA
GAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATC
ACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGGATCAGGGAA
TTGCATTGAGAGGACTCTTTATTATTGACAAAGAAAGGAGTCATCCAGCA
CTCAACCATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAAACACTGA
GAACACTT
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