CF417916

Overview
NameCF417916
Unique NameCF417916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.272e-31
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228

HSP 2 Score: 72.7886 bits (177), Expect = 5.272e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.273e-31
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  179 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 226

HSP 2 Score: 72.7886 bits (177), Expect = 5.273e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  227 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.866e-31
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADDPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  183 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 230

HSP 2 Score: 71.633 bits (174), Expect = 6.866e-31
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAW+Y TNFVPGK
Sbjct:  231 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.867e-31
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  180 GPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227

HSP 2 Score: 71.2478 bits (173), Expect = 6.867e-31
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  228 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.935e-31
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP G+FDPLGLADDP+AFA +K KEIKNGRLAMFSMFG
Sbjct:  192 GPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFG 239

HSP 2 Score: 72.7886 bits (177), Expect = 8.935e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  240 FFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.940e-31
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 2 
Query:   80 EXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228

HSP 2 Score: 72.7886 bits (177), Expect = 8.940e-31
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.944e-31
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP GSFDPLGLADDPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  177 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224

HSP 2 Score: 70.0922 bits (170), Expect = 8.944e-31
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLA PVNNNAWAY TNFVPGK
Sbjct:  225 FFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.164e-30
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  180 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227

HSP 2 Score: 71.633 bits (174), Expect = 1.164e-30
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAW+Y TNFVPGK
Sbjct:  228 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.166e-30
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP GSFDPL LADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  159 GPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFG 206

HSP 2 Score: 71.2478 bits (173), Expect = 1.166e-30
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLA+PVNNNAWAY TNFVPGK
Sbjct:  207 FFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.202e-30
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:   30 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 77

HSP 2 Score: 71.633 bits (174), Expect = 1.202e-30
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAW+Y TNFVPGK
Sbjct:   78 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
The following BLAST results are available for this feature:
BLAST of CF417916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB24_TOBAC5.272e-3181.25Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC5.273e-3181.25Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PEA6.866e-3181.25Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB24_PETSP6.867e-3183.33Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2A_PYRPY8.935e-3177.08Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_NICPL8.940e-3186.36Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_SOYBN8.944e-3181.25Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_TOBAC1.164e-3081.25Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_SOYBN1.166e-3081.25Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2D_SOLLC1.202e-3081.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-846 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417916 ID=CF417916; Name=CF417916; organism=Citrus sinensis; type=EST; length=434bp
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGANGG
TTACAGAATTGCTGGAGGGCCGCTCGGCTGAANTGACTGACCCATTGTAC
CCACGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGANCTCAAGGNTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGACTTCTTCGTTCAGGCCATTGTCACCGGCAANGGACCGNT
ANAGAACTTGNNCNACCACTTGGCCGACCCTGTNAACAACAATGCCTGGG
CCTACNCCACCAACTTTGTCCCCGGAAAGNGAGCTTCNGNTGATAACNTT
AGNANCNTGGAAATTGGAATTGANAGTGATTGGTTATTGATGTGACTCTA
TTTCAACTTGCAAAACATGTGAATTATGTAATGT
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