CF417916

Overview
NameCF417916
Unique NameCF417916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.570e-30
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228

HSP 2 Score: 70.4774 bits (171), Expect = 2.570e-30
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPVNNNAWA+ TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.348e-30
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 2 
Query:   80 EXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            E  DPLYP GSFDPLGLA+DPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  184 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227

HSP 2 Score: 70.8626 bits (172), Expect = 3.348e-30
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQA+VTG GP  NL  HLADPVNNNAW+Y TNFVPGK
Sbjct:  228 FFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.358e-30
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPEAFA LK K IKNGRLAMFSMFG
Sbjct:  181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFG 228

HSP 2 Score: 71.633 bits (174), Expect = 4.358e-30
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAW+Y TNFVPGK
Sbjct:  229 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.359e-30
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADD EAFA LK KEIKNGRLAMFSMFG
Sbjct:  178 GPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFG 225

HSP 2 Score: 71.2478 bits (173), Expect = 4.359e-30
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  226 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.631e-29
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DP+YP G+FDPLGLADDP+AFA LK KEIKNGRLAMFSMFG
Sbjct:  179 GPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 226

HSP 2 Score: 69.707 bits (169), Expect = 1.631e-29
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPV NNAWAY TNFVPGK
Sbjct:  227 FFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.124e-29
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP G+FDPLGLADDPEAFA LK KEIKNGRLAMFSMFG
Sbjct:  178 GPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225

HSP 2 Score: 67.3958 bits (163), Expect = 2.124e-29
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPV NNAWA+ TNFVPGK
Sbjct:  226 FFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.601e-29
Identity = 36/48 (75.00%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLADDPEAF  LK KE+K GRLAM SMFG
Sbjct:  179 GPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFG 226

HSP 2 Score: 72.0182 bits (175), Expect = 3.601e-29
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  H+ADPVNNNAWAY TNFVPGK
Sbjct:  227 FFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.104e-29
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DP+YP GSFDPLGLADDPEAFA LK KE+KNGRLAMFSMFG
Sbjct:  179 GPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226

HSP 2 Score: 66.2402 bits (160), Expect = 6.104e-29
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADP  NNAWAY TNF PGK
Sbjct:  227 FFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.109e-29
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E TDP+YP GSFDPLGLADDPEA A LK KE+KNGRLAMFSMFG
Sbjct:  170 GPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFG 217

HSP 2 Score: 66.2402 bits (160), Expect = 6.109e-29
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWAY T   PGK
Sbjct:  218 FFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256
[Close]
BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.948e-29
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G   E  DPLYP GSFDPLGLA+DPE  A LK KE+KNGRLAMFSMFG
Sbjct:  178 GPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFG 225

HSP 2 Score: 71.2478 bits (173), Expect = 7.948e-29
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPGK 329
            FFVQAIVTG GP  NL  HLADPVNNNAWA+ TNFVPGK
Sbjct:  226 FFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
The following BLAST results are available for this feature:
BLAST of CF417916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB2E_SOLLC2.570e-3081.25Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB25_NICPL3.348e-3086.36Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB25_TOBAC4.358e-3079.17Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU4.359e-3081.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_GOSHI1.631e-2977.08Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_LEMGI2.124e-2981.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE3.601e-2975.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU6.104e-2979.17Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_SOYBN6.109e-2979.17Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR7.948e-2975.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-846 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417916 ID=CF417916; Name=CF417916; organism=Citrus sinensis; type=EST; length=434bp
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGANGG
TTACAGAATTGCTGGAGGGCCGCTCGGCTGAANTGACTGACCCATTGTAC
CCACGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGANCTCAAGGNTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGACTTCTTCGTTCAGGCCATTGTCACCGGCAANGGACCGNT
ANAGAACTTGNNCNACCACTTGGCCGACCCTGTNAACAACAATGCCTGGG
CCTACNCCACCAACTTTGTCCCCGGAAAGNGAGCTTCNGNTGATAACNTT
AGNANCNTGGAAATTGGAATTGANAGTGATTGGTTATTGATGTGACTCTA
TTTCAACTTGCAAAACATGTGAATTATGTAATGT
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