CF417916 | Citrus Genome Database

Overview


Name	CF417916
Unique Name	CF417916
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	434

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.939e-24
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G + E  DPLYP  SFDPLGLADDP+ FA LK KEIKNGRLAMFS FG
Sbjct:  170 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFG 217

HSP 2 Score: 55.4546 bits (132), Expect = 3.939e-24
Identity = 26/40 (65.00%), Postives = 27/40 (67.50%), Query Frame = 3

Query:  204 CLDFFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVP 323
            C  FFVQAIVTG GP  NL  HLADP  NNA+A  T F P
Sbjct:  215 CFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.118e-24
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G + E  DPLYP  +FDPLGLADDP+ FA LK KEIKNGRLAMF+  G
Sbjct:  188 GPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLG 235

HSP 2 Score: 59.6918 bits (143), Expect = 5.118e-24
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 3

Query:  204 CLDFFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVP 323
            CL FFVQAIVTG GP  NL  HLA+P  NNA+AY T F P
Sbjct:  233 CLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.240e-23
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G + E  DPLYP  SFDPLGLADDP+ FA LK KEIKNGRLA FSMFG
Sbjct:  167 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFG 214

HSP 2 Score: 52.373 bits (124), Expect = 3.240e-23
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVP 323
            FFVQAIVTG GP  NL  HLA+P  NNA+A+ T F P
Sbjct:  215 FFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.762e-19
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            G+  E  D LYP G FDPLGLADDP+ F  LK KEIKNGRLAM  M G
Sbjct:   36 GQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLG 83

HSP 2 Score: 38.891 bits (89), Expect = 1.762e-19
Identity = 21/43 (48.84%), Postives = 23/43 (53.49%), Query Frame = 3

Query:  198 SPCLDFFVQAIVTGXGPXXNLXXHLADP-VNNNAWAYXTNFVP 323
            S  L F+ QAIVTG GP  N   HL DP  +N   A  T F P
Sbjct:   79 SGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121

HSP 3 Score: 29.6462 bits (65), Expect = 1.762e-19
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYR 57
            +LAI A QV+LMGAV GYR
Sbjct:   11 LLAILATQVLLMGAVEGYR 29

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 9.550e-14
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG 78
            ILAIWACQVVLMGAV GYR+ GGPLG
Sbjct:  156 ILAIWACQVVLMGAVEGYRVGGGPLG 181

HSP 2 Score: 43.1282 bits (100), Expect = 9.550e-14
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 2

Query:   68 GRSAEXTDPLYPRGSFDPLGLADDPEAF 151
            G   E  D LYP G+FDPLGLA+DPEAF
Sbjct:  178 GPLGEGLDQLYPGGAFDPLGLAEDPEAF 205

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.321e-13
Identity = 41/72 (56.94%), Postives = 45/72 (62.50%), Query Frame = 2

Query:   59 LLEGRSAEXTDPLYPRGSFDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFGLLRSGHCHRQXTXXELXXPLG 274
            +  G   E TDPLYP GSFD LGLA+D EAFA LK KE+KNGRLAMFSMFG        R+     L   LG
Sbjct:  180 IARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLG 250

HSP 2 Score: 46.2098 bits (108), Expect = 1.763e-11
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1

Query:    1 ILAIWACQVVLMGAVXGYRIAGGPLG*XD*PIVP 102
            ILAIW  +V+LMGAV GYRIA GPLG    P+ P
Sbjct:  161 ILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP 194

HSP 3 Score: 41.9726 bits (97), Expect = 1.763e-11
Identity = 22/38 (57.89%), Postives = 24/38 (63.16%), Query Frame = 3

Query:  213 FFVQAIVTGXGPXXNLXXHLADPVNNNAWAYXTNFVPG 326
            FFVQAIV+      NL  HL   VNNNA +  TNFVPG
Sbjct:  230 FFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.496e-13
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 2

Query:   89 DPLYPRGS-FDPLGLADDPEAFAXLKXKEIKNGRLAMFSMFG 211
            DP YP G  F+PLG   D ++   LK KEIKNGRLAM ++ G
Sbjct:  197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILG 238

HSP 2 Score: 46.9802 bits (110), Expect = 3.496e-13
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3

Query:  207 LDFFVQAIVTGXGPXXNLXXHLADPVNNN 293
            L +F+QA+VTG GP  NL  HLADPVNNN
Sbjct:  237 LGYFIQALVTGVGPYQNLLDHLADPVNNN 265

[Close]

BLAST of CF417916 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 6.197e-12
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 2

Query:   89 DPLYPRGSF-DPLGLADDPEAFAXLKXKEIKNGRLAMFSMFGLLRSG 226
            +P YP G F +PLG   D ++   LK KE+KNGRLAM ++ G    G
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQG 245

HSP 2 Score: 44.2838 bits (103), Expect = 6.197e-12
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 3

Query:  207 LDFFVQAIVTGXGPXXNLXXHLADPVNNN 293
            L +F+Q +VTG GP  NL  H+ADPVNNN
Sbjct:  239 LGYFIQGLVTGVGPYQNLLDHVADPVNNN 267

The following BLAST results are available for this feature:

BLAST of CF417916 vs. ExPASy Swiss-Prot

BLAST of CF417916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB2_CHLMO	3.939e-24	75.00	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_DUNSA	5.118e-24	68.75	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_CHLRE	3.240e-23	75.00	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_EUGGR	1.762e-19	66.67	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB21_SILPR	9.550e-14	88.46	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB2_MALDO	2.321e-13	56.94	Chlorophyll a-b binding protein AB10, chloroplasti...	[more]
CB13_SOLLC	3.496e-13	54.76	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB23_PEA	6.197e-12	46.81	Chlorophyll a-b binding protein 3, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-846 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417916 ID=CF417916; Name=CF417916; organism=Citrus sinensis; type=EST; length=434bp
ATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGANGG
TTACAGAATTGCTGGAGGGCCGCTCGGCTGAANTGACTGACCCATTGTAC
CCACGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGANCTCAAGGNTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGACTTCTTCGTTCAGGCCATTGTCACCGGCAANGGACCGNT
ANAGAACTTGNNCNACCACTTGGCCGACCCTGTNAACAACAATGCCTGGG
CCTACNCCACCAACTTTGTCCCCGGAAAGNGAGCTTCNGNTGATAACNTT
AGNANCNTGGAAATTGGAATTGANAGTGATTGGTTATTGATGTGACTCTA
TTTCAACTTGCAAAACATGTGAATTATGTAATGT