CF417917

Overview
NameCF417917
Unique NameCF417917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.360e-81
Identity = 157/227 (69.16%), Postives = 177/227 (77.97%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +T A+   +FAG  A++ S       G    G+  MR+TV K+ P S    WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G       +    L +     YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFS
Sbjct:    4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAI-EGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 225          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.730e-81
Identity = 151/227 (66.52%), Postives = 177/227 (77.97%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            ++ A+      G+     +N   +++G   G R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G       +    L + +   YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFS
Sbjct:    4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFS 226          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.730e-81
Identity = 157/228 (68.86%), Postives = 181/228 (79.39%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC--*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +T A+   AFAG+ A++ S      +G    GR+TMR+TV   K    S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+L G     R+     +   +DL   YPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFS
Sbjct:    4 STMALSSPAFAGK-AVKLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL--LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81
Identity = 160/233 (68.67%), Postives = 180/233 (77.25%), Query Frame = 2
Query:   17 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            MA+  I  + AFAG   ++++  N  +  VG A G  R+TMR+    KS   SI   WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+L G       +    L +     YPGG FDPLGLADDPD FA++KVKE+KNGRLAMFS
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAI-EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFS 236          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81
Identity = 156/228 (68.42%), Postives = 176/228 (77.19%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +T A+  +AFAG+     S+ F          R+TMR+T  K+ P     S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G       +    L + +   YPGG FDPLGLADDP+ FA++KVKELKNGRLAMFS
Sbjct:    4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI-EGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFS 223          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81
Identity = 153/224 (68.30%), Postives = 179/224 (79.91%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +T A+   A AG+ A++ +       G    GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+L G       +    L + +   YPGG+FDPLGLA+DP++ AELKVKELKNGRLAMFS
Sbjct:    4 STMALSSPALAGK-AVKVAPSSSELFG---NGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAV-EGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFS 222          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81
Identity = 156/228 (68.42%), Postives = 177/228 (77.63%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC--*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +T A+   AFAG+      N       V   GR+TMR+TV   K    S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+L G     R+     +   +DL   YPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFS
Sbjct:    4 STMALSSPAFAGKAV----NLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL--LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.277e-80
Identity = 154/226 (68.14%), Postives = 175/226 (77.43%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSTPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            AT A+  S FAG+    L  S+E      V    R++MR+T  +    S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVL G       +    L + +   YPGG+FDPLGLADD + FAELKVKE+KNGRLAMFS
Sbjct:    4 ATMALSSSTFAGKAVKNLSSSSE------VQGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAV-EGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFS 222          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.277e-80
Identity = 157/227 (69.16%), Postives = 179/227 (78.85%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC--*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +T A+   AFAG+ A++ S       G    GR+TMR+TVK T  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G     R+     +   +DL   YPGG+FDPLGLA DP+ FAELKVKE+KNGRLAMFS
Sbjct:    4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDL--LYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFS 224          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.851e-80
Identity = 154/233 (66.09%), Postives = 172/233 (73.82%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            MA+  I   AFAG           + +GV  G     R+TMR+        S   S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G       +    L +     YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV-EGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 232          
The following BLAST results are available for this feature:
BLAST of CF417917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB27_TOBAC3.360e-8169.16Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB28_PEA5.730e-8166.52Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH5.730e-8168.86Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY7.484e-8168.67Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE7.484e-8168.42Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_APIGR7.484e-8168.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH7.484e-8168.42Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_HORVU1.277e-8068.14Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL1.277e-8069.16Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY4.851e-8066.09Chlorophyll a-b binding protein type 2 member 1B, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-847 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417917 ID=CF417917; Name=CF417917; organism=Citrus sinensis; type=EST; length=689bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCC
CCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCT
CTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGC
TGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCG
TGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCT
GCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCA
GTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTA
TCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGG
CCTGCCAGGTTGTGCTCCATGGGTTTTGTTGAAGGATACAGAATTTGGTG
GCGGTCCTCTTGGTGAAGGACTTGACCCACTTTTACCCTGGTGGTGCTTT
TGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGG
TCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCA
back to top