CF417917
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 3.360e-81 Identity = 157/227 (69.16%), Postives = 177/227 (77.97%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +T A+ +FAG A++ S G G+ MR+TV K+ P S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G + L + YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFS Sbjct: 4 STMALSSPSFAGN-AVKLSPSSSEITG---NGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAI-EGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 225
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 5.730e-81 Identity = 151/227 (66.52%), Postives = 177/227 (77.97%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS----TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 ++ A+ G+ +N +++G G R TMR++ + + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G + L + + YPGG+FDPLGLADDP+ FAELKVKELKNGRLAMFS Sbjct: 4 SSMALSSPTLTGKPVETSANPSSQELG---GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFS 226
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 5.730e-81 Identity = 157/228 (68.86%), Postives = 181/228 (79.39%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC--*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +T A+ AFAG+ A++ S +G GR+TMR+TV K S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+L G R+ + +DL YPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFS Sbjct: 4 STMALSSPAFAGK-AVKLSPAASEVLG---SGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL--LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81 Identity = 160/233 (68.67%), Postives = 180/233 (77.25%), Query Frame = 2 Query: 17 MATSAI-QQSAFAGQ--TALRQSNEFVRKVGVADG-GRITMRRTV--KSTPQSI---WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 MA+ I + AFAG ++++ N + VG A G R+TMR+ KS SI WYGPDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+L G + L + YPGG FDPLGLADDPD FA++KVKE+KNGRLAMFS Sbjct: 5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAI-EGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFS 236
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81 Identity = 156/228 (68.42%), Postives = 176/228 (77.19%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +T A+ +AFAG+ S+ F R+TMR+T K+ P S WYGPDR YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVL G + L + + YPGG FDPLGLADDP+ FA++KVKELKNGRLAMFS Sbjct: 4 STMALSSTAFAGKAVNVPSSLFGE-------ARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAI-EGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFS 223
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81 Identity = 153/224 (68.30%), Postives = 179/224 (79.91%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKS-TPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +T A+ A AG+ A++ + G GR++MR+TVK+ S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+L G + L + + YPGG+FDPLGLA+DP++ AELKVKELKNGRLAMFS Sbjct: 4 STMALSSPALAGK-AVKVAPSSSELFG---NGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAV-EGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFS 222
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 7.484e-81 Identity = 156/228 (68.42%), Postives = 177/228 (77.63%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV---KSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC--*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +T A+ AFAG+ N V GR+TMR+TV K S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWA QV+L G R+ + +DL YPGG+FDPLGLA DP+ FAELKVKELKNGRLAMFS Sbjct: 4 STMALSSPAFAGKAV----NLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL--LYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 1.277e-80 Identity = 154/226 (68.14%), Postives = 175/226 (77.43%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTA--LRQSNEFVRKVGVADGGRITMRRTVKSTPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 AT A+ S FAG+ L S+E V R++MR+T + S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVL G + L + + YPGG+FDPLGLADD + FAELKVKE+KNGRLAMFS Sbjct: 4 ATMALSSSTFAGKAVKNLSSSSE------VQGDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAV-EGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFS 222
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 1.277e-80 Identity = 157/227 (69.16%), Postives = 179/227 (78.85%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC--*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +T A+ AFAG+ A++ S G GR+TMR+TVK T S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+L G R+ + +DL YPGG+FDPLGLA DP+ FAELKVKE+KNGRLAMFS Sbjct: 4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDL--LYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFS 224
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 4.851e-80 Identity = 154/233 (66.09%), Postives = 172/233 (73.82%), Query Frame = 2 Query: 17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 MA+ I AFAG + +GV G R+TMR+ S S WYGPDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+L G + L + YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV-EGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 232 The following BLAST results are available for this feature:
BLAST of CF417917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417917 ID=CF417917; Name=CF417917; organism=Citrus sinensis; type=EST; length=689bpback to top |