CF417917

Overview
NameCF417917
Unique NameCF417917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21
Identity = 71/193 (36.79%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  113 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + +   F  + + +      K     YPGGAFDPLG + DP +F ELK+KE+KNGRLAM +
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKK----YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLA 201          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = 2
Query:  212 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + +   F    +++      K     YPGGAFDPLG + DP +F ELKVKE+KNGRLA+ +
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKK----YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLA 202          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 75/237 (31.65%), Postives = 111/237 (46.84%), Query Frame = 2
Query:   20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGA-FDPLGL-ADDPDQFAELKVKELKNGRLAMFS 688
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G C     +     +      YPGG  FDPLG  +  P +  EL+ KE+KNGRLAM +
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPG-CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 66/180 (36.67%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  170 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGA-FDPLGL-ADDPDQFAELKVKELKNGRLAMFS 688
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G C     +     +      YPGG  FDPLG  +  P +  EL+ KE+KNGRLAM +
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPG-CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  443 LDYLGNPNLIHAQSILAIWACQVVLHGFC*--RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            LDYLGNP+L+HAQSILAIWA QV+L G     R+     +   +DL   YPGG+FDPL    DP+ FAELKVKE+KNGRLAMFS
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDL--LYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFS 82          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +L+HAQSILAIWACQVVL G       +    L + +   YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS
Sbjct:  152 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 225          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +L+HAQSILAIWACQVVL G       +    L + +   YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS
Sbjct:  152 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 225          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +L+HAQSILAIWACQVVL G       +    L + +   YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS
Sbjct:    1 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 74          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +L+HAQSILAIWACQVVL G       +    L + +   YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS
Sbjct:  150 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 223          
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688
            +L+HAQSILAIWACQVVL G       +    L + +   YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS
Sbjct:  150 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 223          
The following BLAST results are available for this feature:
BLAST of CF417917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB121_HORVU1.028e-2136.79Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.754e-2140.63Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC2.290e-2131.65Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.102e-2136.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA3.657e-1961.90Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2F_SOLLC2.370e-1864.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.370e-1864.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC2.370e-1864.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.370e-1864.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.370e-1864.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-847 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417917 ID=CF417917; Name=CF417917; organism=Citrus sinensis; type=EST; length=689bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCC
CCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCT
CTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGC
TGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCG
TGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCT
GCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCA
GTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTA
TCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGG
CCTGCCAGGTTGTGCTCCATGGGTTTTGTTGAAGGATACAGAATTTGGTG
GCGGTCCTCTTGGTGAAGGACTTGACCCACTTTTACCCTGGTGGTGCTTT
TGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGG
TCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCA
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