CF417917
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.028e-21 Identity = 71/193 (36.79%), Postives = 99/193 (51.30%), Query Frame = 2 Query: 113 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 GR+TM + W+ P +P+ P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + F + + + K YPGGAFDPLG + DP +F ELK+KE+KNGRLAM + Sbjct: 40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKK----YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLA 201
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21 Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = 2 Query: 212 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 PSYL G PGD+G+D+ GL P + +E E+IH RWAML G + PE L G W KA GG YLG P + ++ I A + + F +++ K YPGGAFDPLG + DP +F ELKVKE+KNGRLA+ + Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKK----YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLA 202
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21 Identity = 75/237 (31.65%), Postives = 111/237 (46.84%), Query Frame = 2 Query: 20 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGA-FDPLGL-ADDPDQFAELKVKELKNGRLAMFS 688 A+S I AF+ ++ R + GGR +TP + + PDRP + P +L G PGD+G+D GL++DPE+ N++ E++H RWAMLGA G PE+L+K G+ W+ AG Q + + L + +L WA ++ G C + + YPGG FDPLG + P + EL+ KE+KNGRLAM + Sbjct: 6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPG-CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21 Identity = 66/180 (36.67%), Postives = 90/180 (50.00%), Query Frame = 2 Query: 170 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGA-FDPLGL-ADDPDQFAELKVKELKNGRLAMFS 688 PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q + + L + +L WA ++ G C + + YPGG FDPLG + P + EL+ KE+KNGRLAM + Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPG-CVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19 Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 443 LDYLGNPNLIHAQSILAIWACQVVLHGFC*--RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 LDYLGNP+L+HAQSILAIWA QV+L G R+ + +DL YPGG+FDPL DP+ FAELKVKE+KNGRLAMFS Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDL--LYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFS 82
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +L+HAQSILAIWACQVVL G + L + + YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS Sbjct: 152 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 225
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +L+HAQSILAIWACQVVL G + L + + YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS Sbjct: 152 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 225
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +L+HAQSILAIWACQVVL G + L + + YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS Sbjct: 1 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 74
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +L+HAQSILAIWACQVVL G + L + + YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS Sbjct: 150 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 223
BLAST of CF417917 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18 Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 464 NLIHAQSILAIWACQVVLHGFC*RIQNLVAVLLVKDLTHFYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFS 688 +L+HAQSILAIWACQVVL G + L + + YPGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFS Sbjct: 150 SLVHAQSILAIWACQVVLMGAV-EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFS 223 The following BLAST results are available for this feature:
BLAST of CF417917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417917 ID=CF417917; Name=CF417917; organism=Citrus sinensis; type=EST; length=689bpback to top |