CF417923

Overview
NameCF417923
Unique NameCF417923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417923 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.689e-64
Identity = 132/221 (59.73%), Postives = 151/221 (68.33%), Query Frame = 3
Query:    3 RLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQL 665
            +LA+AAMGNAFLLQGGDCAESFKE      R  F+        L FGGQ P+IKVGRMAGQFAKPR DPFE K+G+ L    G  +  +A+ +  ++     L+   C  A +  +                  +LDF EHSEQGDRYQELAHRVDEALGFM A GLT+DHP M +TEFWTSHECLLLPYEQALTR DSTSG +YDCSAHMLWVGERTRQL
Sbjct:  119 KLAQAAMGNAFLLQGGDCAESFKELMPLYSR-YFQNTASDECRLTFGGQCPVIKVGRMAGQFAKPRLDPFEEKDGLWLSGANGWPVAWEAYCKLQQLSPSRALLLVVCCYAESHPM------------------DLDFVEHSEQGDRYQELAHRVDEALGFMDACGLTVDHPIMATTEFWTSHECLLLPYEQALTREDSTSGLFYDCSAHMLWVGERTRQL 320          
BLAST of CF417923 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.345e-45
Identity = 101/234 (43.16%), Postives = 136/234 (58.12%), Query Frame = 3
Query:    6 LAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTR-----------RDSTS---GQYYDCSAHMLWVGERTRQL 665
            L + A G AFLLQGGDCAE F     + I    ++LLQM +VL++G   P++++GRMAGQ+AKPRS P E  NG ++PS++GD +NG  F    R  DP RL+RAY  S+ATLN +R     G A +     W L          +YQE   R+ E L FM   G    +  +++ E +TSHE LLL YE+ LTR            DST+    +YY+ SAH LW+G+RTRQ+
Sbjct:   60 LRDVAQGKAFLLQGGDCAELFSYCQQDVIESKIKLLLQMSLVLLWGADKPVVRIGRMAGQYAKPRSSPVETINGKEVPSFRGDILNG--FHPDERELDPNRLVRAYQYSSATLNYIRGAIGSGIADLHGPLDWGLGHVRDPALKSKYQETVDRIQEMLRFMHTIGAD-QNEKLSTVELFTSHEGLLLEYEEPLTRLLNHPSVRSYPPDSTTPPKKEYYNTSAHFLWIGDRTRQI 290          
BLAST of CF417923 vs. ExPASy Swiss-Prot
Match: PHZC_PSEFL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas fluorescens GN=phzC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 75/220 (34.09%), Postives = 101/220 (45.91%), Query Frame = 3
Query:    6 LAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQL 665
            LA  A G A ++Q GDCAE   E  A+++     +L  +        Q P+++VGR+AGQFAKPRS+  E    V+LP Y+GD +NG       R  D +RL+R                  GY A Q       D  +H                 LG+   +G       +T +  WTSHE L+L YE    RRD   G+ +  S H  W+GERTRQL
Sbjct:   51 LARVAAGEAMIIQCGDCAEDMDESAADHVTRKAALLDMLAGTFRLVTQQPVVRVGRIAGQFAKPRSNHSERIGDVELPVYRGDMVNGRDAVLGHRQHDAQRLVR------------------GYRAAQ-------DIMQH-----------------LGWKEPSG----QEQLTGSPAWTSHEMLVLDYELPQVRRDE-QGRTFLGSTHWPWIGERTRQL 223          
BLAST of CF417923 vs. ExPASy Swiss-Prot
Match: PHZC_PSECL (Probable phospho-2-dehydro-3-deoxyheptonate aldolase OS=Pseudomonas chlororaphis GN=phzC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 73/220 (33.18%), Postives = 101/220 (45.91%), Query Frame = 3
Query:    6 LAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPIIKVGRMAGQFAKPRSDPFEVKNGVKLPSYKGDNINGDAFDEKSRVPDPERLIRAYCQSAATLNLLRSFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTLDHPAMTSTEFWTSHECLLLPYEQALTRRDSTSGQYYDCSAHMLWVGERTRQL 665
            LA  A G A ++Q GDCAE   E   +++     VL  +        Q P+++VGR+AGQFAKPRS+  E    V+LP Y+GD +NG       R  D +RL+R Y  SAA                        D  +H                 LG+ A+A        ++ +  WT+HE L+L YE    R+D   G+ +  S H  W+GERTRQL
Sbjct:   51 LARVAAGEAMVIQSGDCAEDMDESTPDHVARKAAVLDILAGTFRLVTQQPVVRVGRIAGQFAKPRSNNNERIGDVELPVYRGDMVNGREAVCGHRQHDAQRLVRGY--SAAR-----------------------DIMQH-----------------LGWKASA----SQEQLSGSPAWTNHEMLVLDYELPQLRQDE-QGRVFLGSTHWPWIGERTRQL 223          
The following BLAST results are available for this feature:
BLAST of CF417923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AROF_CATRO1.689e-6459.73Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
AROF_NEUCR1.345e-4543.16Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]
PHZC_PSEFL4.655e-2234.09Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
PHZC_PSECL8.778e-2133.18Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-853 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417923 ID=CF417923; Name=CF417923; organism=Citrus sinensis; type=EST; length=692bp
AGAGGCTCGCAGAGGCTGCCATGGGAAACGCTTTCTTGCTTCAGGGTGGT
GACTGTGCTGAGAGTTTCAAGGAGTTCAATGCTAATAATATTAGGGACAC
TTTCAGAGTGTTGTTGCAGATGGGTGTTGTGCTTATGTTTGGCGGCCAAA
TGCCTATCATTAAGGTGGGAAGAATGGCGGGTCAATTTGCAAAGCCAAGA
TCAGATCCTTTTGAGGTGAAGAATGGAGTGAAGCTGCCGAGCTACAAGGG
AGACAACATCAATGGTGATGCTTTTGATGAGAAATCAAGAGTTCCAGACC
CTGAAAGGTTGATTAGGGCTTACTGCCAGTCTGCTGCAACTCTAAACCTT
CTGAGATCCTTTGCAACGGGAGGTTACGCCGCAATGCAGAGGGTTACTCA
GTGGAATCTTGATTTCGCCGAGCACAGTGAGCAGGGAGATAGGTACCAGG
AACTGGCTCACCGTGTTGACGAGGCCTTAGGATTCATGGCTGCTGCGGGT
CTAACACTTGATCATCCTGCCATGACATCAACAGAATTTTGGACCTCTCA
TGAATGCTTGCTTTTGCCTTATGAGCAAGCACTGACAAGACGAGATTCAA
CTTCTGGCCAGTACTATGACTGCTCTGCTCACATGCTTTGGGTTGGGGAG
CGTACTCGGCAGCTGGGATGGTGCCCATGTAGAGTTCCTAAG
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