CF417945

Overview
NameCF417945
Unique NameCF417945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLTB_AZOBR (Glutamate synthase [NADPH] large chain OS=Azospirillum brasilense GN=gltB PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.308e-73
Identity = 137/195 (70.26%), Postives = 160/195 (82.05%), Query Frame = 1
Query:   49 QNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEYGI 633
            +NGD   SAIKQVASGRFGVT  +L    +LEIK+AQGAKPGEGGQLPG KV+  IARLR+S PGV LISPPPHHDIYSIEDLAQLIYDL Q+NP AKV+VKLV  +GIGT+A+GVAK NADII ISG+ GGTGASP +SIK AG PWE+GL+E HQ L  N LR RV LR DGG  +G D+++AA++GA+E+GI
Sbjct:  934 KNGDNWNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGI 1128          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLTA_BACSU (Glutamate synthase [NADPH] large chain OS=Bacillus subtilis GN=gltA PE=2 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.126e-72
Identity = 131/194 (67.53%), Postives = 159/194 (81.96%), Query Frame = 1
Query:   49 QNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEYG 630
            +NGD   SAIKQ+ASGRFGV   +L NAD+L+IK+AQGAKPGEGGQLPG KV  ++A +R S PGV LISPPPHHDIYSIEDLAQLI+DL   N  A++SVKLV +AG+GT+A+GVAK  AD+I ISG+DGGTGASP +SIKH G PWELGL E HQTL+ NGLR+RV+L  DG   +G DV+MAA++GA+E+G
Sbjct:  909 ENGDDRRSAIKQIASGRFGVKSHYLVNADELQIKMAQGAKPGEGGQLPGNKVYPWVADVRGSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANRDARISVKLVSKAGVGTIAAGVAKATADVIVISGYDGGTGASPKTSIKHTGLPWELGLAEAHQTLMLNGLRDRVVLETDGKLMTGRDVVMAALLGAEEFG 1102          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLTB_SYNY3 (Ferredoxin-dependent glutamate synthase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gltB PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.237e-71
Identity = 125/192 (65.10%), Postives = 161/192 (83.85%), Query Frame = 1
Query:   55 GDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEYG 630
            GD+  SAIKQVASGRFGVT  +L+ A +++IK+AQGAKPGEGGQLPGKKV  +IA++R+S PGV LISPPPHHDIYSIEDLA+LI+DL   N +A+++VKLV E G+GT+A+GVAK +AD++ +SG+DGGTGASP +SIKHAG PWELGL ETHQTL+ N LR R+++  DG   +G DV +AA++GA+E+G
Sbjct:  948 GDSKNSAIKQVASGRFGVTSLYLSQAKEIQIKMAQGAKPGEGGQLPGKKVYPWIAKVRHSTPGVGLISPPPHHDIYSIEDLAELIHDLKNANREARINVKLVSEVGVGTIAAGVAKAHADVVLVSGYDGGTGASPQTSIKHAGLPWELGLAETHQTLVLNNLRSRIVVETDGQMKTGRDVAIAALLGAEEFG 1139          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLT1_SCHPO (Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe GN=SPAPB1E7.07 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.562e-70
Identity = 129/195 (66.15%), Postives = 157/195 (80.51%), Query Frame = 1
Query:   46 LQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEYG 630
            L NGDT  SAIKQ+ASGRFGVT  +L++AD+L+IK+AQGAKPGEGG+LPG KVS  IA+ R+S  GV LISPPPHHDIYSIEDL QLIYD+   NP+A+VSVKLV E G+G VASGVAK  AD I +SGHDGGTGAS  + IK+AG PWELG+ ETHQTL+ N LR RV+++ DG   +G DV +A ++GA+E+G
Sbjct:  987 LANGDTMRSAIKQIASGRFGVTSWYLSDADELQIKMAQGAKPGEGGELPGNKVSESIAKTRHSTAGVGLISPPPHHDIYSIEDLKQLIYDMKSANPRARVSVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGASRWTGIKYAGLPWELGVAETHQTLVLNDLRGRVVIQTDGQIRTGRDVAIACLLGAEEWG 1181          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLSN_MEDSA (Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 128/187 (68.45%), Postives = 150/187 (80.21%), Query Frame = 1
Query:   70 SAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEYG 630
            SAIKQVASGRFGV+  +L NAD+L+IK+AQGAKPGEGG+LPG KV   IA  RNS  GV LISPPPHHDIYSIEDLAQLI+DL   NP A++SVKLV EAG+G +ASGV KG+A+ + ISGHDGGTGAS  + IK AG PWELGL ETHQTL+AN LR R  L+ DG   +G DV +AA++GA+EYG
Sbjct: 1049 SAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARISVKLVSEAGVGVIASGVVKGHAEHVLISGHDGGTGASRWTGIKSAGLPWELGLAETHQTLVANDLRGRTTLQTDGQLKTGRDVAIAALLGAEEYG 1235          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLT1_YEAST (Glutamate synthase [NADH] OS=Saccharomyces cerevisiae GN=GLT1 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.022e-66
Identity = 123/193 (63.73%), Postives = 152/193 (78.76%), Query Frame = 1
Query:   49 QNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEY 627
            +NGDT  SAIKQVAS RFGVT  +L++AD+++IKIAQGAKPGEGG+LP  KVS  IA+ R+S P V LISPPPHHDIYSIEDL QLIYDL   NP+A +SVKLV E G+G VASGVAK  AD I +SGHDGGTGA+  +S+K+AG PWELGL ETHQTL+ N LR  V+++ DG   +G D+ +A ++GA+ +
Sbjct:  981 ENGDTMRSAIKQVASARFGVTSYYLSDADEIQIKIAQGAKPGEGGELPAHKVSKDIAKTRHSTPNVGLISPPPHHDIYSIEDLKQLIYDLKCANPRAGISVKLVSEVGVGIVASGVAKAKADHILVSGHDGGTGAARWTSVKYAGLPWELGLAETHQTLVLNDLRRNVVVQTDGQLRTGFDIAVAVLLGAESF 1173          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLUS_METJA (Glutamate synthase OS=Methanocaldococcus jannaschii GN=MJ1351 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.188e-36
Identity = 85/187 (45.45%), Postives = 104/187 (55.61%), Query Frame = 1
Query:   64 ATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNP-KAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGAD 621
            A   I QVASGRFGV   +L     +EIKI QGAKPG GG LPG+KV+A I+  R    G   ISP PHHDIYSIEDLAQL+  L +    K  V VK+        +A G+A  +AD + I G+ GGTGA+P     H G P E+ +    Q L   GLR  + +   GG     DV  A  +GAD
Sbjct:  222 ADHIITQVASGRFGVNEEYLMKGSAIEIKIGQGAKPGIGGHLPGEKVTAEISATRMIPEGSDAISPAPHHDIYSIEDLAQLVRSLKEATRWKKPVFVKIAAVHNAPAIAVGIATSDADAVVIDGYKGGTGAAPKVFRDHVGIPIEMAIAAVDQRLREEGLRNEISIIASGGIRCSADVFKAIALGAD 408          
BLAST of CF417945 vs. ExPASy Swiss-Prot
Match: GLXD_RHIME (Glutamate synthase large subunit-like protein OS=Rhizobium meliloti GN=glxD PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 66/202 (32.67%), Postives = 94/202 (46.53%), Query Frame = 1
Query:   76 IKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIYDLHQVNPKAKVSVKLVGEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFXSGVDVLMAAVMGADEYGIWFCG------NDCYWD 663
            + Q    R+G+ P  L  AD +E+ + QGAKPG GG L G+K+S  +A +RN   G+   S   H D    +DL   I +L ++    K     VG A      +   K  AD++ + G  GGT A+    I++ G P    +    Q L   G+  +V L V GG  SG DV  A  +GAD   I          ND +W+
Sbjct:  138 VYQYLPSRYGMNPKDLRRADAIEVVVGQGAKPGGGGMLLGQKISDRVANMRNLPKGIDQRSACRHPDWTGPDDLEIKILELREITDWEKPIYVKVGGARPYYDTALAVKAGADVVVLDGMQGGTAATQDVFIENVGMPTLACIRPAVQALQDLGMHRKVQLVVSGGIRSGADVAKALALGADAVAIGTAALVAIGDNDPHWE 339          
The following BLAST results are available for this feature:
BLAST of CF417945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLTB_AZOBR7.308e-7370.26Glutamate synthase [NADPH] large chain OS=Azospiri... [more]
GLTA_BACSU2.126e-7267.53Glutamate synthase [NADPH] large chain OS=Bacillus... [more]
GLTB_SYNY35.237e-7165.10Ferredoxin-dependent glutamate synthase 1 OS=Synec... [more]
GLT1_SCHPO7.562e-7066.15Putative glutamate synthase [NADPH] OS=Schizosacch... [more]
GLSN_MEDSA2.059e-6768.45Glutamate synthase [NADH], amyloplastic OS=Medicag... [more]
GLT1_YEAST1.022e-6663.73Glutamate synthase [NADH] OS=Saccharomyces cerevis... [more]
GLUS_METJA4.188e-3645.45Glutamate synthase OS=Methanocaldococcus jannaschi... [more]
GLXD_RHIME1.889e-2032.67Glutamate synthase large subunit-like protein OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-875 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417945 ID=CF417945; Name=CF417945; organism=Citrus sinensis; type=EST; length=678bp
GATGTTGTTGATGGGTACTCTCCAACTCTACCACACCTTAAAGGTCTTCA
AAATGGAGATACTGCTACTAGTGCTATTAAACAGGTTGCTTCAGGCCGGT
TTGGTGTAACTCCAACATTCTTGGCCAATGCTGATCAGCTGGAAATCAAA
ATTGCACAAGGTGCAAAGCCAGGGGAAGGAGGCCAGTTGCCTGGGAAAAA
AGTTAGTGCATACATTGCAAGGTTGAGAAATTCTAAACCTGGTGTTCCAC
TTATATCTCCACCTCCGCATCACGACATTTATTCGATTGAGGATCTTGCC
CAGTTGATCTATGACCTTCATCAGGTTAACCCTAAAGCTAAGGTGTCTGT
AAAGCTTGTGGGAGAAGCTGGAATAGGAACAGTTGCTTCTGGGGTTGCAA
AGGGTAATGCTGATATTATACAGATATCTGGGCATGACGGTGGAACTGGA
GCCAGCCCTATTAGTTCAATAAAGCATGCTGGTGGTCCTTGGGAACTTGG
ACTTACAGAAACGCATCAAACTCTCATTGCAAATGGACTGAGAGAAAGAG
TAATTCTCAGAGTTGATGGCGGCTTCNAAAGCGGAGTTGATGTCTTAATG
GCTGCAGTAATGGGTGCTGATGAATATGGGATTTGGTTCTGTGGCAATGA
TTGCTACTGGGATGTGTTATGGCCCGCA
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