CF418021

Overview
NameCF418021
Unique NameCF418021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:72..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.179e-57
Identity = 98/127 (77.17%), Postives = 119/127 (93.70%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+A+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAA 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.179e-57
Identity = 98/127 (77.17%), Postives = 119/127 (93.70%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+A+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAA 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.179e-57
Identity = 98/127 (77.17%), Postives = 119/127 (93.70%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+A+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAA 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.179e-57
Identity = 98/127 (77.17%), Postives = 119/127 (93.70%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +N+IM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+A+
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAA 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.830e-56
Identity = 95/127 (74.80%), Postives = 119/127 (93.70%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            M+TP+R+RLMRDFK+LQ+DPPAG+SGAP +++I+ W A+IFGP +TP++ GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS A+
Sbjct:    1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 6.073e-55
Identity = 93/127 (73.23%), Postives = 109/127 (85.83%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MST AR+RLMRDFKR+QQDPPAG+S +P  +++MLWNAVI GP DTP++ GTFKL L F E YPNKPP V+FVS MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPN  SPAN+EA+
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAA 127          

HSP 2 Score: 33.4982 bits (75), Expect = 6.073e-55
Identity = 14/23 (60.87%), Postives = 18/23 (78.26%), Query Frame = 2
Query:  515 ARMFSENKREYNRRVREIVEQSW 583
            A++  ENK+EY RRVR+ VE SW
Sbjct:  127 AQLHRENKKEYVRRVRKTVEDSW 149          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.328e-54
Identity = 95/128 (74.22%), Postives = 114/128 (89.06%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASA 519
            MSTP++KRL+RDFKRL  DPP GISGAP  +++M+WNAVIFGP DTP++ GTFKL L F E YPNKPPTV+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPNPNSPAN+EA++
Sbjct:    1 MSTPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAAS 128          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 8.611e-54
Identity = 89/127 (70.08%), Postives = 108/127 (85.04%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MST AR+RLMRDFKR+Q DPPAG+S +P  +++M WNAVI GP DTP++ GTF+L +QF E YPNKPP V+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EAS
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEAS 127          

HSP 2 Score: 33.4982 bits (75), Expect = 8.611e-54
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  515 ARMFSENKREYNRRVREIVEQSW 583
            + ++ +N+REY +RVRE VE+SW
Sbjct:  127 SNLYKDNRREYIKRVRETVERSW 149          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.463e-53
Identity = 89/127 (70.08%), Postives = 106/127 (83.46%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MST AR+RLMRDFKR+Q DPPAG+S +P  +++M WNAVI GP DTP++ GTF+L +QF E YPNKPP V+F+S MFHPN+YA G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EAS
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEAS 127          

HSP 2 Score: 33.4982 bits (75), Expect = 1.463e-53
Identity = 11/23 (47.83%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  515 ARMFSENKREYNRRVREIVEQSW 583
            + ++ +N++EY +RVRE VE+SW
Sbjct:  127 SNLYKDNRKEYTKRVRETVEKSW 149          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 2.704e-52
Identity = 87/127 (68.50%), Postives = 105/127 (82.68%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MST AR+RLMRDFKR+Q DPPAG+S +P  +++M WNAVI GP DTP++ GTF+L + F E YPNKPP+V+F+S MFHPN+YA G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  S AN EAS
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEAS 127          

HSP 2 Score: 33.8834 bits (76), Expect = 2.704e-52
Identity = 11/23 (47.83%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  515 ARMFSENKREYNRRVREIVEQSW 583
            + ++ +N++EY++RVRE VE+SW
Sbjct:  127 SNLYKDNRKEYHKRVRETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2B_RABIT3.179e-5777.17Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE3.179e-5777.17Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN3.179e-5777.17Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN3.179e-5777.17Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC1_CAEEL7.830e-5674.80Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_SCHPO6.073e-5573.23Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_USTMA7.328e-5474.22Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_TRIHA8.611e-5470.08Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NECHA1.463e-5370.08Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_NEUCR2.704e-5268.50Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-951 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bp
ATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGA
TTGTTTCCCGAGAAAATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCA
ACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCA
AGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCTCCGGC
TGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTG
TTATATTCGGGCCGGATGATACCCCATGGGATGGAGGTACGTTTAAATTG
ACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTT
TGTTTCTCGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCT
TGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATA
CTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGC
AAATTCGGAGGCCAGCGCGGATGTTTAGCGAGAACAAGCGTGAATACAAT
AGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCA
ACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAA
ATAACATTTAAGATTCAA
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