CF418021

Overview
NameCF418021
Unique NameCF418021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEA 133          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 48/128 (37.50%), Postives = 83/128 (64.84%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            MS    +R+ ++   +QQD  AGI     ++ I     +  GP+ TP++GG F + ++   DYP +PP + F ++++HPN+ +  G+ICLDIL++QWSP+Y + + L S+QSLLC P P++P +++ +
Sbjct:    1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVA 128          
The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC9A_DANRE8.737e-2340.60SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC9_XENTR1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.141e-2240.60SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.141e-2240.60SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC1_SCHPO1.141e-2237.50Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-951 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bp
ATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGA
TTGTTTCCCGAGAAAATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCA
ACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCA
AGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCTCCGGC
TGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTG
TTATATTCGGGCCGGATGATACCCCATGGGATGGAGGTACGTTTAAATTG
ACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTT
TGTTTCTCGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCT
TGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATA
CTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGC
AAATTCGGAGGCCAGCGCGGATGTTTAGCGAGAACAAGCGTGAATACAAT
AGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCA
ACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAA
ATAACATTTAAGATTCAA
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