CF418021
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14 Identity = 36/127 (28.35%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 148 ARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASAD 522 A +RLM++ + +++ D + +L W +I PD+ P+D G F++ + F +YP KPP + F ++++HPNI G +CL ++ W P ++ S+ +L+ DP P P ++ + + Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE 128
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14 Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 1 Query: 151 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANS 507 +KRL ++ LQ DPP G ++ NSI W + G T ++G F+L +F+ YP P V F HP++Y++G ICL IL WSP V ++ SI S+L C P NS Sbjct: 5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNS 129
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14 Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 1 Query: 151 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANS 507 +KRL ++ LQ DPP G ++ NSI W + G T ++G F+L +F+ YP P V F HP++Y++G ICL IL WSP V ++ SI S+L C P NS Sbjct: 5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNS 129
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13 Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1 Query: 139 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASAD 522 S A KRL +++K + +PP I AP +++I+ W+ VI GP TP++ G + TL F DYP PP +R ++ PN + +CL D W+P + V IL + S + + + S + D Sbjct: 3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMIT----PNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMTGDEQTTGSVSTSDKD 131
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13 Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 474 +S A RL ++ Q +PP G DN + W + G T + T++L + F E YP + P V F+ HP+IY++G ICLDIL + WSP V++I SI S+L Sbjct: 12 LSKIATNRLQKELVEWQMNPPTGFKHKVTDN-LQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13 Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 148 ARKRLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSE 510 A KR+ ++ L ++ P + D++ +++W+ ++ PD P+ F L + F +YP KPPT+RF ++++HPNI DG +CL ++ + W P +L ++ L+ PN P E Sbjct: 3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLE 124
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 223 DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEASA 519 D +I LW I GP+++ ++ F+L ++ + DYP P V+F++ + H N+ G ICL+IL+ W+ ++ +I+ SI LL PNP P NSE ++ Sbjct: 33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELAS 132
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 1 Query: 139 STPARK--------RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL-CDPNPNSPANSE 510 S+P+RK RL ++ Q +PP G DN + W + G T + T+ L ++F + YP + P V FV HP+IY++G ICLDIL + WSP V+++ SI S+L P P +++ Sbjct: 5 SSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDN-LQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDND 137
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13 Identity = 38/130 (29.23%), Postives = 67/130 (51.54%), Query Frame = 1 Query: 130 VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASA 519 V+ + RL +D L IS N +M + I PD+ + G F + Q + YP++ P V+ ++++HPNI +G++CL+IL+ W P+ ++ ++ + L +PN P N EA+A Sbjct: 26 VKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTI-KPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAA 154
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13 Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 145 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516 P+ RL +D + + D + M N I PD + GGT+ + + YP +PP V+ + R++HPNI DG++CL++L+ W+P D+ +I+ I L +PN P N +A+ Sbjct: 29 PSLIRLKKDLENIDLSEQICEYTTYLDENPMRVNLAI-KPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAA 151 The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 250
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bpback to top |