CF418021

Overview
NameCF418021
Unique NameCF418021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.677e-14
Identity = 36/127 (28.35%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  148 ARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASAD 522
            A +RLM++ + +++           D + +L W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ + +
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEE 128          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  151 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANS 507
            +KRL ++   LQ DPP G  ++     NSI  W   + G   T ++G  F+L  +F+  YP   P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS
Sbjct:    5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNS 129          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  151 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANS 507
            +KRL ++   LQ DPP G  ++     NSI  W   + G   T ++G  F+L  +F+  YP   P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS
Sbjct:    5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNS 129          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  139 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASAD 522
            S  A KRL +++K +  +PP  I  AP +++I+ W+ VI GP  TP++ G +  TL F  DYP  PP +R ++    PN     +  +CL   D     W+P + V  IL  + S +      + + S +  D
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMIT----PNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMTGDEQTTGSVSTSDKD 131          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 474
            +S  A  RL ++    Q +PP G      DN +  W   + G   T +   T++L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V++I  SI S+L
Sbjct:   12 LSKIATNRLQKELVEWQMNPPTGFKHKVTDN-LQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  148 ARKRLMRDFKRLQQDPPAGISGAPQDNS-IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSE 510
            A KR+ ++   L ++ P  +     D++ +++W+ ++  PD  P+    F L + F  +YP KPPT+RF ++++HPNI  DG +CL ++  + W P      +L ++  L+  PN   P   E
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLE 124          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/100 (36.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  223 DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEASA 519
            D +I LW   I GP+++ ++   F+L ++ + DYP   P V+F++ + H N+   G ICL+IL+   W+   ++ +I+ SI  LL  PNP  P NSE ++
Sbjct:   33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELAS 132          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  139 STPARK--------RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL-CDPNPNSPANSE 510
            S+P+RK        RL ++    Q +PP G      DN +  W   + G   T +   T+ L ++F + YP + P V FV     HP+IY++G ICLDIL + WSP   V+++  SI S+L   P    P +++
Sbjct:    5 SSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDN-LQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRPTDND 137          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 38/130 (29.23%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  130 VRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASA 519
            V+  +    RL +D   L       IS     N +M +   I  PD+  +  G F  + Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N EA+A
Sbjct:   26 VKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTI-KPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAA 154          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  145 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            P+  RL +D + +             D + M  N  I  PD   + GGT+   +   + YP +PP V+ + R++HPNI  DG++CL++L+  W+P  D+ +I+  I  L  +PN   P N +A+
Sbjct:   29 PSLIRLKKDLENIDLSEQICEYTTYLDENPMRVNLAI-KPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAA 151          
The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UB2L3_PONAB5.677e-1428.35Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBE2W_MOUSE9.683e-1436.00Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN9.683e-1436.00Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC6_KLULA1.652e-1331.58Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC16_ARATH1.652e-1336.84Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UB2L6_RAT1.652e-1330.08Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBC1_MIMIV2.157e-1336.00Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC18_ARATH2.157e-1333.58Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UB12L_ARATH2.157e-1329.23Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_KLULA2.817e-1331.45NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-951 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bp
ATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGA
TTGTTTCCCGAGAAAATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCA
ACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCA
AGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCTCCGGC
TGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTG
TTATATTCGGGCCGGATGATACCCCATGGGATGGAGGTACGTTTAAATTG
ACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTT
TGTTTCTCGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCT
TGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATA
CTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGC
AAATTCGGAGGCCAGCGCGGATGTTTAGCGAGAACAAGCGTGAATACAAT
AGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCA
ACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAA
ATAACATTTAAGATTCAA
back to top