CF418021

Overview
NameCF418021
Unique NameCF418021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:72..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  139 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 474
            S  A KRLM+++  LQ++P   +   P   +I+ W+ +I GP DTP++GG +  TL F  DYP KPP +R +  S  F  N      +CL   D     W+P + V+ IL  + S +
Sbjct:    3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNT----RLCLSFSDFHPKSWNPSWMVSTILVGLVSFM 115          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  148 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 474
            A  RL ++F   Q +PP+G      DN +  W   + G   T +   T++L ++F E YP + P V F      HP+IY++G ICLD+L + WSP   +++I  SI S+L
Sbjct:   16 ATNRLQKEFMEWQTNPPSGFKHRVSDN-LQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSML 124          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  139 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 474
            S  ++KRL +++K +  +PP  +S  P D +I+ W+ VI GP  TP++ G +   L+F  +YP KPP++  ++    PN     +  +CL   D   + W+P + VA ILT + S +
Sbjct:    3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMIT----PNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFM 115          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  133 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 489
            R  T A +RL +D+ R+++DP   I   P  ++I+ W+ V+ GP+ TP++GG +   L F  ++P KPP++  ++    PN     +  +CL I     + W+P + V+ ILT + S + +  P
Sbjct:    8 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  133 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 489
            R  T A +RL +D+ R+++DP   I   P  ++I+ W+ V+ GP+ TP++GG +   L F  ++P KPP++  ++    PN     +  +CL I     + W+P + V+ ILT + S + +  P
Sbjct:    8 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  133 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 489
            R  T A +RL +D+ R+++DP   I   P  ++I+ W+ V+ GP+ TP++GG +   L F  ++P KPP++  ++    PN     +  +CL I     + W+P + V+ ILT + S + +  P
Sbjct:    8 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12
Identity = 34/131 (25.95%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  148 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASADV*RE 534
            A +RL R+   L +   + +      D S+++W  ++  P+  P++ G F++ + F   YP  PP + F ++++HPN+   G +CL I+  + W P      +L ++ +++ +P P  P  S+ + +  RE
Sbjct:    3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVRE 132          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 474
            M++   KRL ++   L+ +PP  IS    DN +  W   + G + + + G  FKL  +F+  YP   P V F+     HP+IY++G ICL IL + WSP   V+++  SI S+L
Sbjct:    1 MTSRYAKRLQKELLDLKTNPPPCISITEGDN-LDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSML 113          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  154 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASADV*REQA*IQ*ESTGNC 570
            KRL ++++ L ++P + +   P  N I+ W+ V+ G + TP+ GG +   ++F  +YP KPP +     M  PN        ICL   D     W+P++ V++ILT + S + D   NSP     +  V  +Q   +     NC
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGI----TMTTPNGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD---NSPTTGSVNTSVAEKQRLAKSSLAFNC 144          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  154 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNS 495
            KRL ++++ L ++P + +   P  N I+ W+ V+ G + TP+ GG +   ++F  +YP KPP +     M  PN        ICL   D     W+P++ V++ILT + S + D +P +
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGI----TMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT 122          
The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC6_SCHPO3.679e-1335.90Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UBC17_ARATH3.679e-1336.36Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBC6_DEBHA4.806e-1333.33Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UB2J2_MOUSE1.071e-1231.45Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_HUMAN1.071e-1231.45Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]
UB2J2_BOVIN1.071e-1231.45Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]
UBC84_DROME1.398e-1225.95Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBE2W_DICDI2.385e-1235.96Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBC33_ARATH6.939e-1229.86Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
UBC34_ARATH1.546e-1131.09Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-951 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bp
ATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGA
TTGTTTCCCGAGAAAATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCA
ACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCA
AGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCTCCGGC
TGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTG
TTATATTCGGGCCGGATGATACCCCATGGGATGGAGGTACGTTTAAATTG
ACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTT
TGTTTCTCGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCT
TGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATA
CTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGC
AAATTCGGAGGCCAGCGCGGATGTTTAGCGAGAACAAGCGTGAATACAAT
AGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCA
ACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAA
ATAACATTTAAGATTCAA
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