CF418021
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13 Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1 Query: 139 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 474 S A KRLM+++ LQ++P + P +I+ W+ +I GP DTP++GG + TL F DYP KPP +R + S F N +CL D W+P + V+ IL + S + Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNT----RLCLSFSDFHPKSWNPSWMVSTILVGLVSFM 115
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1 Query: 148 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 474 A RL ++F Q +PP+G DN + W + G T + T++L ++F E YP + P V F HP+IY++G ICLD+L + WSP +++I SI S+L Sbjct: 16 ATNRLQKEFMEWQTNPPSGFKHRVSDN-LQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSML 124
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13 Identity = 39/117 (33.33%), Postives = 66/117 (56.41%), Query Frame = 1 Query: 139 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 474 S ++KRL +++K + +PP +S P D +I+ W+ VI GP TP++ G + L+F +YP KPP++ ++ PN + +CL D + W+P + VA ILT + S + Sbjct: 3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMIT----PNGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFM 115
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12 Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 133 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 489 R T A +RL +D+ R+++DP I P ++I+ W+ V+ GP+ TP++GG + L F ++P KPP++ ++ PN + +CL I + W+P + V+ ILT + S + + P Sbjct: 8 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12 Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 133 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 489 R T A +RL +D+ R+++DP I P ++I+ W+ V+ GP+ TP++GG + L F ++P KPP++ ++ PN + +CL I + W+P + V+ ILT + S + + P Sbjct: 8 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12 Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 133 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNP 489 R T A +RL +D+ R+++DP I P ++I+ W+ V+ GP+ TP++GG + L F ++P KPP++ ++ PN + +CL I + W+P + V+ ILT + S + + P Sbjct: 8 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.398e-12 Identity = 34/131 (25.95%), Postives = 69/131 (52.67%), Query Frame = 1 Query: 148 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASADV*RE 534 A +RL R+ L + + + D S+++W ++ P+ P++ G F++ + F YP PP + F ++++HPN+ G +CL I+ + W P +L ++ +++ +P P P S+ + + RE Sbjct: 3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVRE 132
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12 Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1 Query: 136 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 474 M++ KRL ++ L+ +PP IS DN + W + G + + + G FKL +F+ YP P V F+ HP+IY++G ICL IL + WSP V+++ SI S+L Sbjct: 1 MTSRYAKRLQKELLDLKTNPPPCISITEGDN-LDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSML 113
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12 Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 1 Query: 154 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASADV*REQA*IQ*ESTGNC 570 KRL ++++ L ++P + + P N I+ W+ V+ G + TP+ GG + ++F +YP KPP + M PN ICL D W+P++ V++ILT + S + D NSP + V +Q + NC Sbjct: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGI----TMTTPNGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMD---NSPTTGSVNTSVAEKQRLAKSSLAFNC 144
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11 Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 154 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNS 495 KRL ++++ L ++P + + P N I+ W+ V+ G + TP+ GG + ++F +YP KPP + M PN ICL D W+P++ V++ILT + S + D +P + Sbjct: 8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGI----TMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT 122 The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 250
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bpback to top |